Factsheet for Bra009723.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004378.1-P
Bra009723.1-P
Bra015875.1-P
Bra038308.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	Bra004378.1-P	AT1G69390.1	16014621
AT5G24020.1	Bra038308.1-P	AT1G69390.1	16014621
AT5G24020.1	Bra004378.1-P	AT1G69390.1	16146521
AT5G24020.1	Bra038308.1-P	AT1G69390.1	16146521
AT5G24020.1	Bra015875.1-P	AT1G75010.1	17304239
AT5G24020.1	Bra009723.1-P	AT5G24020.1	16014621
AT5G24020.1	Bra009723.1-P	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11108	Canola	mitochondrion	33.91	75.64
CDX88064	Canola	plastid	100.0	53.21
CDX80403	Canola	plastid	100.0	53.05
AT5G24020.1	Thale cress	plastid	98.85	52.76
GSMUA_Achr9P23510_001	Banana	plastid	87.93	52.4
KRH08863	Soybean	plastid	90.23	48.46
VIT_16s0050g01070.t01	Wine grape	plastid	91.95	48.05
Solyc03g007980.1.1	Tomato	plastid	91.38	48.04
PGSC0003DMT400026256	Potato	plastid	91.38	47.89
Os06t0106000-01	Rice	plastid	74.14	42.16
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	74.71	41.8
TraesCS7D01G014700.1	Wheat	plastid	74.71	41.67
TraesCS4A01G474300.1	Wheat	plastid	74.71	41.53
KRH38382	Soybean	cytosol	90.23	41.32
EER87699	Sorghum	plastid	73.56	41.03
Zm00001d035898_P001	Maize	plastid	73.56	40.63
HORVU7Hr1G001800.1	Barley	plastid	75.29	38.87
KRH48126	Soybean	extracellular	41.38	38.3
KRG89709	Soybean	plastid	0.57	0.7

Protein Annotations

MapMan:13.6.1.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra009723	EnsemblPlants:Bra009723.1	EnsemblPlants:Bra009723.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0010020	GO:GO:0016043	GO:GO:0016787	GO:GO:0030899	GO:GO:0042802
GO:GO:0042803	UniProt:M4CZS6	InterPro:P-loop_NTPase	PFAM:PF10609	PANTHER:PTHR43384	PANTHER:PTHR43384:SF6
SUPFAM:SSF52540	UniParc:UPI000253F114	InterPro:YlxH/NBP35	:	:	:

Description

AT5G24020 (E=2e-095) MIND, ARC11, ATMIND1 | MIND; ATPase/ calcium-dependent ATPase/ protein binding / protein homodimerization

Coordinates

chrA06:+:16847951..16848475

Molecular Weight (calculated)

18972.1 Da

IEP (calculated)

4.313

GRAVY (calculated)

0.101

Length

174 amino acids

Sequence
(BLAST)

001: MGFGGKALEW LVDALKTRPE GSPDFIIIDC PAGIDAGFIT AITPANEAVL VTTPDITALR DADRVTGLLE CDGIRDIKMI VNRVRTDMIR GEDMMSVLDV
101: QEMLGLSLLG AIPEDSEVIR STNRGFPLVL NKPPTLAGLA FEQAAWRLVE QDSMKAVMVE EEPKKRGFFS FFGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.