Factsheet for Zm00001d035898_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021407_P001
Zm00001d023760_P001
Zm00001d035898_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	Zm00001d023760_P001	AT1G69390.1	16014621
AT5G24020.1	Zm00001d023760_P001	AT1G69390.1	16146521
AT5G24020.1	Zm00001d021407_P001	AT1G75010.1	17304239
AT5G24020.1	Zm00001d035898_P001	AT5G24020.1	16014621
AT5G24020.1	Zm00001d035898_P001	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87699	Sorghum	plastid	93.33	94.23
Os06t0106000-01	Rice	plastid	90.79	93.46
TraesCS7D01G014700.1	Wheat	plastid	89.21	90.06
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	88.89	90.03
TraesCS4A01G474300.1	Wheat	plastid	88.57	89.14
HORVU7Hr1G001800.1	Barley	plastid	87.3	81.6
Bra009723.1-P	Field mustard	cytosol	40.63	73.56
GSMUA_Achr9P23510_001	Banana	plastid	61.27	66.1
KRH08863	Soybean	plastid	66.35	64.51
AT5G24020.1	Thale cress	plastid	66.35	64.11
CDX88064	Canola	plastid	66.35	63.91
CDX80403	Canola	plastid	66.35	63.72
CDY11108	Canola	mitochondrion	15.56	62.82
VIT_16s0050g01070.t01	Wine grape	plastid	66.35	62.76
Solyc03g007980.1.1	Tomato	plastid	64.13	61.03
PGSC0003DMT400026256	Potato	plastid	64.13	60.84
KRH48126	Soybean	extracellular	35.24	59.04
KRH38382	Soybean	cytosol	66.03	54.74
KRG89709	Soybean	plastid	15.56	34.27

Protein Annotations

EntrezGene:100381681	MapMan:13.6.1.2.1	Gene3D:3.40.50.300	ProteinID:AQK79906.1	EMBL:BT061978	UniProt:C0HI22
InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020
GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0030899	GO:GO:0042802	GO:GO:0042803
InterPro:MinD	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PFAM:PF01656	PIRSF:PIRSF003092	PANTHER:PTHR43384
PANTHER:PTHR43384:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01968	UniParc:UPI00019487D1	EnsemblPlantsGene:Zm00001d035898	EnsemblPlants:Zm00001d035898_P001
EnsemblPlants:Zm00001d035898_T001	SEG:seg	:	:	:	:

Description

Site-determining protein

Coordinates

chr6:+:58726248..58736714

Molecular Weight (calculated)

33097.2 Da

IEP (calculated)

6.517

GRAVY (calculated)

0.112

Length

315 amino acids

Sequence
(BLAST)

001: MAFAPPHLLP LPPPPAAAST RAVSARNHGG RTAPELSGPT PRVVVVTSGK GGVGKTTTTA NLAASLARLG LPAVAVDADA GLRNLDLLLG LENRVHLTAA
101: DVLAGDCRLD QALVRHRALH DLHLLCLSKP RSKLPLAFGS KTLTWVADAL RRSTSPPAFI LIDCPAGVDA GFVTAIAPAE EAVLVTTPDI TALRDADRVA
201: GLLECDGIKD IKIVVNRVRP DLVKGEDMMS ALDVQEMLGL PLLGVVPEDT EVIRSTNRGV PLVLNDPPTP AGLALEQATW RLVERDAMTA VMVEEQERPE
301: KKGGGGGFFS FFGGR

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.