Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08863 | Soybean | plastid | 82.98 | 48.15 |
| VIT_16s0050g01070.t01 | Wine grape | plastid | 79.79 | 45.05 |
| Solyc03g007980.1.1 | Tomato | plastid | 78.19 | 44.41 |
| PGSC0003DMT400026256 | Potato | plastid | 78.19 | 44.28 |
| CDX88064 | Canola | plastid | 76.6 | 44.04 |
| CDX80403 | Canola | plastid | 76.6 | 43.9 |
| AT5G24020.1 | Thale cress | plastid | 75.53 | 43.56 |
| Bra009723.1-P | Field mustard | cytosol | 38.3 | 41.38 |
| KRH38382 | Soybean | cytosol | 82.98 | 41.05 |
| GSMUA_Achr9P23510_001 | Banana | plastid | 57.98 | 37.33 |
| TraesCS7A01G017400.2 | Wheat | mitochondrion, plastid | 60.11 | 36.33 |
| Os06t0106000-01 | Rice | plastid | 59.04 | 36.27 |
| TraesCS7D01G014700.1 | Wheat | plastid | 60.11 | 36.22 |
| TraesCS4A01G474300.1 | Wheat | plastid | 60.11 | 36.1 |
| EER87699 | Sorghum | plastid | 58.51 | 35.26 |
| Zm00001d035898_P001 | Maize | plastid | 59.04 | 35.24 |
| HORVU7Hr1G001800.1 | Barley | plastid | 59.57 | 33.23 |
| KRG89709 | Soybean | plastid | 23.4 | 30.77 |
| CDY11108 | Canola | mitochondrion | 10.11 | 24.36 |
Protein Annotations
| EMBL:ACUP02004207 | EnsemblPlants:KRH48126 | EnsemblPlantsGene:GLYMA_07G070000 | Gene3D:3.40.50.300 | InterPro:AAA_dom | InterPro:P-loop_NTPase |
| PANTHER:PTHR43384 | PANTHER:PTHR43384:SF6 | PFAM:PF13614 | ProteinID:KRH48126 | ProteinID:KRH48126.1 | SEG:seg |
| SUPFAM:SSF52540 | UniParc:UPI000296CA53 | UniProt:K7L057 | MapMan:13.6.1.2.1 | : | : |
Description
hypothetical protein
Coordinates
chr7:-:6348862..6349428
Molecular Weight (calculated)
20747.2 Da
IEP (calculated)
4.307
GRAVY (calculated)
0.368
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKTTTANIG LSLARLGFSV VAIDVDVGLR NLDLLLSLEN HVNYTVIEVL NGDCHLDQAL VCDKRWSNFE LLCISKPRSK LPLEFGGKAV TWLVDALKAR
101: SQGCPDFILI DCPADINTGF ITAITLANEA VLITTPDIIS LRDADRVTDL LECDVISLFE QVAWRLVEQD NMQAVIVDFG LKSMINIW
101: SQGCPDFILI DCPADINTGF ITAITLANEA VLITTPDIIS LRDADRVTDL LECDVISLFE QVAWRLVEQD NMQAVIVDFG LKSMINIW
001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG
Arabidopsis Description
MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.