Factsheet for TraesCS7D01G014700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G474300.1
TraesCS5A01G107500.1
TraesCS5A01G356200.1
TraesCS5B01G114800.1
TraesCS5B01G358700.1
TraesCS5D01G117000.1
TraesCS5D01G365000.1
TraesCS7A01G017400.2
TraesCS7D01G014700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	TraesCS5A01G107500.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5B01G114800.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5D01G117000.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5A01G107500.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5B01G114800.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5D01G117000.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5A01G356200.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS5B01G358700.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS5D01G365000.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS4A01G474300.1	AT5G24020.1	16014621
AT5G24020.1	TraesCS7A01G017400.2	AT5G24020.1	16014621
AT5G24020.1	TraesCS7D01G014700.1	AT5G24020.1	16014621
AT5G24020.1	TraesCS4A01G474300.1	AT5G24020.1	16146521
AT5G24020.1	TraesCS7A01G017400.2	AT5G24020.1	16146521
AT5G24020.1	TraesCS7D01G014700.1	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G474300.1	Wheat	plastid	98.08	97.76
Os06t0106000-01	Rice	plastid	90.38	92.16
EER87699	Sorghum	plastid	89.42	89.42
Zm00001d035898_P001	Maize	plastid	90.06	89.21
HORVU7Hr1G001800.1	Barley	plastid	91.35	84.57
Bra009723.1-P	Field mustard	cytosol	41.67	74.71
GSMUA_Achr9P23510_001	Banana	plastid	64.1	68.49
KRH08863	Soybean	plastid	68.27	65.74
AT5G24020.1	Thale cress	plastid	67.63	64.72
CDX88064	Canola	plastid	66.99	63.91
CDX80403	Canola	plastid	66.99	63.72
VIT_16s0050g01070.t01	Wine grape	plastid	67.95	63.66
Solyc03g007980.1.1	Tomato	plastid	65.71	61.93
PGSC0003DMT400026256	Potato	plastid	65.71	61.75
CDY11108	Canola	mitochondrion	15.38	61.54
KRH48126	Soybean	extracellular	36.22	60.11
KRH38382	Soybean	cytosol	67.31	55.26
KRG89709	Soybean	plastid	16.99	37.06

Protein Annotations

MapMan:13.6.1.2.1	Gene3D:3.40.50.300	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020
GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0030899	GO:GO:0042802	GO:GO:0042803
InterPro:MinD	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PFAM:PF01656	PIRSF:PIRSF003092	PANTHER:PTHR43384
PANTHER:PTHR43384:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01968	EnsemblPlantsGene:TraesCS7D01G014700	EnsemblPlants:TraesCS7D01G014700.1	TIGR:cd02036
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:6469652..6471339

Molecular Weight (calculated)

32861.2 Da

IEP (calculated)

7.948

GRAVY (calculated)

0.108

Length

312 amino acids

Sequence
(BLAST)

001: MAFPPRLLLP PRPPLPAPPA RASARPNGGG GRTAPELSGP TPRVVVVTSG KGGVGKTTTT ANLAASLARL GLPVVAVDAD AGLRNLDLLL GLENRVNLTA
101: ADVLAGDCRL DQALVRHRSL RGLHLLCLSK PRSKLPLAFG SKTLTWVADA LRRGADPPAF ILIDCPAGVD AGFVTAIAPA EEAVLVTTPD ITALRDADRV
201: AGLLECDGIK DIKIIVNRVR PDLVRGEDMM SALDVQEMLG LPLLGVVPED SEVIRSTNRG VPLVLTDPPT PAGLALEQAT WRLVERDAMT AVMVEEQERP
301: KKKGGFFSFF GG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.