Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G107500.1 | Wheat | plastid | 96.6 | 96.19 |
| TraesCS5D01G117000.1 | Wheat | plastid | 96.17 | 95.76 |
| HORVU5Hr1G035440.4 | Barley | plastid | 91.49 | 87.4 |
| EES17047 | Sorghum | plastid | 75.74 | 78.07 |
| Os12t0498400-01 | Rice | plastid | 77.45 | 77.12 |
| Zm00001d023760_P001 | Maize | plastid | 72.77 | 75.0 |
| KRH74964 | Soybean | plastid | 53.19 | 53.88 |
| KRH70831 | Soybean | plastid | 53.19 | 53.88 |
| GSMUA_Achr3P18770_001 | Banana | plastid | 51.49 | 52.84 |
| GSMUA_Achr10P... | Banana | plastid | 51.06 | 52.4 |
| Bra038308.1-P | Field mustard | cytosol | 42.55 | 51.02 |
| CDY44064 | Canola | plastid | 46.38 | 49.32 |
| VIT_14s0108g01300.t01 | Wine grape | plastid | 48.51 | 48.93 |
| PGSC0003DMT400072828 | Potato | plastid | 48.51 | 48.72 |
| CDY28547 | Canola | plastid | 45.96 | 48.65 |
| CDX95938 | Canola | plastid | 45.53 | 48.42 |
| Bra004378.1-P | Field mustard | plastid | 45.53 | 48.42 |
| Solyc05g012710.2.1 | Tomato | plastid | 47.66 | 47.86 |
| CDY40918 | Canola | plastid | 45.53 | 47.77 |
| AT1G69390.1 | Thale cress | plastid | 45.53 | 46.72 |
| CDY51505 | Canola | cytosol | 18.72 | 44.0 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G114800.1 | EnsemblPlantsGene:TraesCS5B01G114800 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0032955 | GO:GO:0051301 | InterPro:MinE | PANTHER:PTHR33404 | PANTHER:PTHR33404:SF8 | PFAM:PF03776 |
| SEG:seg | MapMan:13.6.1.2.3 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:188017690..188020571
Molecular Weight (calculated)
25896.8 Da
IEP (calculated)
6.926
GRAVY (calculated)
-0.202
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMATATAIS GRVSGEASAI LAPSASSLPA PVRRAANSKG FHAFLRVASS KLMLTPGRLC IERQSCPRRS STCSALSRQD FSPVTQDMEG FLHSIVNMGF
101: FDRLKLAWKI IFPAPTIHEN TNASIAKQRL KMILFSDRCE VSDEAKKKIV ENVVEALSEF VEIESRDNVQ VDISTDAGLG TVYSVTVPVR RVKPEYQESE
201: EQYRGKIVGV DFKDTGESSG NVDVTFDFYV PNENH
101: FDRLKLAWKI IFPAPTIHEN TNASIAKQRL KMILFSDRCE VSDEAKKKIV ENVVEALSEF VEIESRDNVQ VDISTDAGLG TVYSVTVPVR RVKPEYQESE
201: EQYRGKIVGV DFKDTGESSG NVDVTFDFYV PNENH
001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
Arabidopsis Description
MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.