Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004378.1-P | |
| Bra009723.1-P | |
| Bra015875.1-P | |
| Bra038308.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44064 | Canola | plastid | 92.35 | 81.9 |
| Bra004378.1-P | Field mustard | plastid | 77.04 | 68.33 |
| AT1G69390.1 | Thale cress | plastid | 78.57 | 67.25 |
| KRH74964 | Soybean | plastid | 63.78 | 53.88 |
| VIT_01s0011g00270.t01 | Wine grape | plastid | 61.73 | 53.78 |
| KRH70831 | Soybean | plastid | 63.27 | 53.45 |
| PGSC0003DMT400072828 | Potato | plastid | 60.2 | 50.43 |
| Solyc05g012710.2.1 | Tomato | plastid | 59.69 | 50.0 |
| VIT_14s0108g01300.t01 | Wine grape | plastid | 54.59 | 45.92 |
| GSMUA_Achr10P... | Banana | plastid | 52.55 | 44.98 |
| Os12t0498400-01 | Rice | plastid | 52.04 | 43.22 |
| TraesCS5B01G114800.1 | Wheat | plastid | 51.02 | 42.55 |
| Zm00001d023760_P001 | Maize | plastid | 49.49 | 42.54 |
| GSMUA_Achr3P18770_001 | Banana | plastid | 49.49 | 42.36 |
| TraesCS5A01G107500.1 | Wheat | plastid | 50.51 | 41.95 |
| TraesCS5D01G117000.1 | Wheat | plastid | 50.0 | 41.53 |
| EES17047 | Sorghum | plastid | 47.96 | 41.23 |
| HORVU5Hr1G035440.4 | Barley | plastid | 51.02 | 40.65 |
Protein Annotations
| EnsemblPlants:Bra038308.1 | EnsemblPlants:Bra038308.1-P | EnsemblPlantsGene:Bra038308 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0032955 | GO:GO:0051301 | InterPro:MinE | PANTHER:PTHR33404 | PANTHER:PTHR33404:SF8 |
| PFAM:PF03776 | UniParc:UPI00025466A3 | UniProt:M4FB42 | MapMan:13.6.1.2.3 | : | : |
Description
AT1G69390 (E=3e-089) ATMINE1 | ATMINE1 (Arabidopsis homologue of bacterial MinE 1); protein binding
Coordinates
chrA02:+:11354209..11354799
Molecular Weight (calculated)
22083.1 Da
IEP (calculated)
4.942
GRAVY (calculated)
-0.310
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDVNLQVDF ISNVANSLET QKVSISSKNK RGEAKVLARN ATGDYELSPS PVQQEVESFL LNAINMSFFD RLNIAWKIIF PSHASRRSSN ARIAKQRLKM
101: ILFSDRCAVS DEAKRKIVNN IVHALSDFVE IESEEKVQLN VSTDGDLGTI YSVTVPVRRV KPEYQDVDEA GSITNVEYKD TLDGSVDVRF DFYVPE
101: ILFSDRCAVS DEAKRKIVNN IVHALSDFVE IESEEKVQLN VSTDGDLGTI YSVTVPVRRV KPEYQDVDEA GSITNVEYKD TLDGSVDVRF DFYVPE
001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
Arabidopsis Description
MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.