Factsheet for Zm00001d023760_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021407_P001
Zm00001d023760_P001
Zm00001d035898_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	Zm00001d023760_P001	AT1G69390.1	16146521
AT1G69390.1	Zm00001d021407_P001	AT1G75010.1	17304239
AT1G69390.1	Zm00001d035898_P001	AT5G24020.1	16014621
AT1G69390.1	Zm00001d035898_P001	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17047	Sorghum	plastid	92.11	92.11
Os12t0498400-01	Rice	plastid	78.07	75.42
TraesCS5A01G107500.1	Wheat	plastid	75.44	72.88
TraesCS5B01G114800.1	Wheat	plastid	75.0	72.77
TraesCS5D01G117000.1	Wheat	plastid	75.0	72.46
HORVU5Hr1G035440.4	Barley	plastid	73.25	67.89
GSMUA_Achr3P18770_001	Banana	plastid	51.75	51.53
GSMUA_Achr10P...	Banana	plastid	51.32	51.09
Bra038308.1-P	Field mustard	cytosol	42.54	49.49
VIT_14s0108g01300.t01	Wine grape	plastid	50.44	49.36
KRH74964	Soybean	plastid	49.56	48.71
KRH70831	Soybean	plastid	48.68	47.84
CDY28547	Canola	plastid	46.49	47.75
CDY44064	Canola	plastid	46.05	47.51
CDX95938	Canola	plastid	45.61	47.06
Bra004378.1-P	Field mustard	plastid	45.61	47.06
CDY40918	Canola	plastid	45.61	46.43
PGSC0003DMT400072828	Potato	plastid	46.49	45.3
CDY51505	Canola	cytosol	19.74	45.0
AT1G69390.1	Thale cress	plastid	45.18	44.98
Solyc05g012710.2.1	Tomato	plastid	45.61	44.44

Protein Annotations

MapMan:13.6.1.2.3	Gene3D:3.30.1070.10	EntrezGene:541645	ProteinID:AQK39985.1	UniProt:B4FZ48	EMBL:BT042386
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0032955	GO:GO:0051301
InterPro:IPR036707	InterPro:MinE	InterPro:MinE_sf	PFAM:PF03776	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8
UniParc:UPI00017B7847	EnsemblPlantsGene:Zm00001d023760	EnsemblPlants:Zm00001d023760_P001	EnsemblPlants:Zm00001d023760_T001	:	:

Description

chitin synthase homolog1Cell division topological specificity factor homolog chloroplastic

Coordinates

chr10:+:19075995..19079402

Molecular Weight (calculated)

25122.7 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.283

Length

228 amino acids

Sequence
(BLAST)

001: MAMSIFGGCV GGDSGALIAP SASSLRPPFR LVAGPKGHFC TFPHGASSNH SRLCVQHQRC SRSSTQNYAL SRKDFSPITQ DVEGFLHNVV NMGFLDRLKL
101: AWKIMFSAPT TKDTSNANIA KQRLKMILFS DRCEVSDEAK KKIVENIIEA LSEFVEIESR DNVQVDISTD AGLGTVYSVS VPVRRVKPEY QESEEQYRGK
201: IVGVDFKDTG ESSGSVDVTF DFFVPNEN

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.