Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44064 | Canola | plastid | 68.0 | 30.77 |
| CDY28547 | Canola | plastid | 68.0 | 30.63 |
| CDX95938 | Canola | plastid | 67.0 | 30.32 |
| CDY40918 | Canola | plastid | 66.0 | 29.46 |
| AT1G69390.1 | Thale cress | plastid | 64.0 | 27.95 |
| VIT_01s0011g00270.t01 | Wine grape | plastid | 58.0 | 25.78 |
| Solyc05g012710.2.1 | Tomato | plastid | 57.0 | 24.36 |
| PGSC0003DMT400072828 | Potato | plastid | 57.0 | 24.36 |
| KRH74964 | Soybean | plastid | 56.0 | 24.14 |
| KRH70831 | Soybean | plastid | 55.0 | 23.71 |
| VIT_14s0108g01300.t01 | Wine grape | plastid | 49.0 | 21.03 |
| Os12t0498400-01 | Rice | plastid | 47.0 | 19.92 |
| Zm00001d023760_P001 | Maize | plastid | 45.0 | 19.74 |
| GSMUA_Achr10P... | Banana | plastid | 45.0 | 19.65 |
| GSMUA_Achr3P18770_001 | Banana | plastid | 44.0 | 19.21 |
| TraesCS5D01G117000.1 | Wheat | plastid | 45.0 | 19.07 |
| TraesCS5B01G114800.1 | Wheat | plastid | 44.0 | 18.72 |
| TraesCS5A01G107500.1 | Wheat | plastid | 44.0 | 18.64 |
| EES17047 | Sorghum | plastid | 42.0 | 18.42 |
| HORVU5Hr1G035440.4 | Barley | plastid | 44.0 | 17.89 |
Protein Annotations
| EnsemblPlants:CDY51505 | EnsemblPlantsGene:GSBRNA2T00003600001 | GO:A0A078IKD6 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0032955 | GO:GO:0051301 | InterPro:MinE | PANTHER:PTHR33404 | PANTHER:PTHR33404:SF8 |
| PFAM:PF03776 | ProteinID:CDY51505 | ProteinID:CDY51505.1 | UniParc:UPI0004EDDEC5 | UniProt:A0A078IKD6 | MapMan:13.6.1.2.3 |
Description
BnaC06g43460DBnaC06g43460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKD6]
Coordinates
chrLK033002:-:61086..63039
Molecular Weight (calculated)
11166.1 Da
IEP (calculated)
4.539
GRAVY (calculated)
-0.167
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MILFSDRCAV SDEAKRKIVD NIVHALSDFV EIESEEKVQI NVATDDVDEA GSITNVEYKD TLDGSVDVRF DFLCSTVVYL KTSKNSSSLF KVTKTRSHSL
001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
Arabidopsis Description
MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.