Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G107500.1 | Wheat | plastid | 97.88 | 97.88 |
| TraesCS5B01G114800.1 | Wheat | plastid | 95.76 | 96.17 |
| HORVU5Hr1G035440.4 | Barley | plastid | 91.95 | 88.21 |
| EES17047 | Sorghum | plastid | 75.0 | 77.63 |
| Os12t0498400-01 | Rice | plastid | 77.12 | 77.12 |
| Zm00001d023760_P001 | Maize | plastid | 72.46 | 75.0 |
| GSMUA_Achr10P... | Banana | plastid | 50.0 | 51.53 |
| KRH74964 | Soybean | plastid | 50.42 | 51.29 |
| KRH70831 | Soybean | plastid | 50.42 | 51.29 |
| GSMUA_Achr3P18770_001 | Banana | plastid | 49.15 | 50.66 |
| Bra038308.1-P | Field mustard | cytosol | 41.53 | 50.0 |
| CDY44064 | Canola | plastid | 44.92 | 47.96 |
| VIT_14s0108g01300.t01 | Wine grape | plastid | 47.03 | 47.64 |
| CDX95938 | Canola | plastid | 44.49 | 47.51 |
| Bra004378.1-P | Field mustard | plastid | 44.49 | 47.51 |
| CDY28547 | Canola | plastid | 44.49 | 47.3 |
| CDY40918 | Canola | plastid | 44.49 | 46.88 |
| PGSC0003DMT400072828 | Potato | plastid | 46.19 | 46.58 |
| Solyc05g012710.2.1 | Tomato | plastid | 45.34 | 45.73 |
| AT1G69390.1 | Thale cress | plastid | 44.07 | 45.41 |
| CDY51505 | Canola | cytosol | 19.07 | 45.0 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G117000.1 | EnsemblPlantsGene:TraesCS5D01G117000 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0032955 | GO:GO:0051301 | InterPro:MinE | PANTHER:PTHR33404 | PANTHER:PTHR33404:SF8 | PFAM:PF03776 |
| SEG:seg | MapMan:13.6.1.2.3 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:138483660..138491397
Molecular Weight (calculated)
25837.9 Da
IEP (calculated)
7.882
GRAVY (calculated)
-0.135
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMATATAIS GRVSGEASAI LAPSASSLPA PVRRAANSKG CFRAFPRVAS SKLMLTPGRL CIERQSCPRI SSACSALSRR DFSPVTQDME GFLHSIVNMG
101: FLDRLKLAWK IIFPAPTIHE NTNASIAKQR LKMILFSDRC EVSDEAKKKI VENVVEALSE FVEIESRDNV QVDISTDAGL GTVYSVAVPV RRVKPEYQES
201: EEQHRGKIVG VDFKDTGESS GNVDVTFDFY VPNVNH
101: FLDRLKLAWK IIFPAPTIHE NTNASIAKQR LKMILFSDRC EVSDEAKKKI VENVVEALSE FVEIESRDNV QVDISTDAGL GTVYSVAVPV RRVKPEYQES
201: EEQHRGKIVG VDFKDTGESS GNVDVTFDFY VPNVNH
001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
Arabidopsis Description
MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.