Factsheet for TraesCS4A01G474300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G474300.1
TraesCS5A01G107500.1
TraesCS5A01G356200.1
TraesCS5B01G114800.1
TraesCS5B01G358700.1
TraesCS5D01G117000.1
TraesCS5D01G365000.1
TraesCS7A01G017400.2
TraesCS7D01G014700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	TraesCS5A01G107500.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5B01G114800.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5D01G117000.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5A01G107500.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5B01G114800.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5D01G117000.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5A01G356200.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS5B01G358700.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS5D01G365000.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS4A01G474300.1	AT5G24020.1	16014621
AT5G24020.1	TraesCS7A01G017400.2	AT5G24020.1	16014621
AT5G24020.1	TraesCS7D01G014700.1	AT5G24020.1	16014621
AT5G24020.1	TraesCS4A01G474300.1	AT5G24020.1	16146521
AT5G24020.1	TraesCS7A01G017400.2	AT5G24020.1	16146521
AT5G24020.1	TraesCS7D01G014700.1	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G014700.1	Wheat	plastid	97.76	98.08
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	97.12	97.75
Os06t0106000-01	Rice	plastid	90.42	92.48
Zm00001d035898_P001	Maize	plastid	89.14	88.57
EER87699	Sorghum	plastid	88.18	88.46
HORVU7Hr1G001800.1	Barley	plastid	90.73	84.27
Bra009723.1-P	Field mustard	cytosol	41.53	74.71
GSMUA_Achr9P23510_001	Banana	plastid	63.9	68.49
KRH08863	Soybean	plastid	68.05	65.74
AT5G24020.1	Thale cress	plastid	68.05	65.34
CDX80403	Canola	plastid	67.73	64.63
CDX88064	Canola	plastid	67.41	64.53
VIT_16s0050g01070.t01	Wine grape	plastid	67.73	63.66
Solyc03g007980.1.1	Tomato	plastid	65.5	61.93
PGSC0003DMT400026256	Potato	plastid	65.5	61.75
CDY11108	Canola	mitochondrion	15.34	61.54
KRH48126	Soybean	extracellular	36.1	60.11
KRH38382	Soybean	cytosol	67.09	55.26
KRG89709	Soybean	plastid	17.25	37.76

Protein Annotations

EnsemblPlants:TraesCS4A01G474300.1	EnsemblPlantsGene:TraesCS4A01G474300	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016887	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	InterPro:MinD	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PANTHER:PTHR43384
PANTHER:PTHR43384:SF6	PFAM:PF01656	PIRSF:PIRSF003092	SEG:seg	SUPFAM:SSF52540	TIGR:cd02036
TIGRFAMs:TIGR01968	MapMan:13.6.1.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:733712392..733714218

Molecular Weight (calculated)

32895.2 Da

IEP (calculated)

7.948

GRAVY (calculated)

0.099

Length

313 amino acids

Sequence
(BLAST)

001: MAFPPRLLLP PRPPSPSPAP ARASARPSGG GGRTAPELSG PTPRVVVVTS GKGGVGKTTT TANLAASLAR LGLPVVAVDA DAGLRNLDLL LGLENRVNLT
101: AADVLAGDCR LDQALVRHRS LRGLHLLCLS KPRSKLPLAF GSKTLTWVAD ALRRGADPPA FILIDCPAGV DAGFVTAIAP AEEAVLVTTP DITALRDADR
201: VAGLLECDGI KDIKIIVNRV RPDLVRGEDM MSALDVQEML GLPLLGVVPE DSEVIRSTNR GVPLVLTDPP TPAGLALEQA TWRLVERDAM TAVMVEEQER
301: PKKKGGFFSF FGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.