Factsheet for VIT_16s0050g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02140.t01
VIT_01s0011g00270.t01
VIT_14s0108g01300.t01
VIT_16s0050g01070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	VIT_01s0011g00270.t01	AT1G69390.1	16014621
AT5G24020.1	VIT_14s0108g01300.t01	AT1G69390.1	16014621
AT5G24020.1	VIT_01s0011g00270.t01	AT1G69390.1	16146521
AT5G24020.1	VIT_14s0108g01300.t01	AT1G69390.1	16146521
AT5G24020.1	VIT_01s0010g02140.t01	AT1G75010.1	17304239
AT5G24020.1	VIT_16s0050g01070.t01	AT5G24020.1	16014621
AT5G24020.1	VIT_16s0050g01070.t01	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009723.1-P	Field mustard	cytosol	48.05	91.95
Solyc03g007980.1.1	Tomato	plastid	85.89	86.4
PGSC0003DMT400026256	Potato	plastid	85.29	85.54
KRH08863	Soybean	plastid	82.58	84.88
CDX88064	Canola	plastid	82.28	83.79
AT5G24020.1	Thale cress	plastid	81.38	83.13
CDX80403	Canola	plastid	81.38	82.62
KRH48126	Soybean	extracellular	45.05	79.79
GSMUA_Achr9P23510_001	Banana	plastid	69.67	79.45
CDY11108	Canola	mitochondrion	17.12	73.08
KRH38382	Soybean	cytosol	81.68	71.58
Os06t0106000-01	Rice	plastid	63.36	68.95
TraesCS7D01G014700.1	Wheat	plastid	63.66	67.95
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	63.36	67.85
TraesCS4A01G474300.1	Wheat	plastid	63.66	67.73
EER87699	Sorghum	plastid	62.76	66.99
Zm00001d035898_P001	Maize	plastid	62.76	66.35
HORVU7Hr1G001800.1	Barley	plastid	64.26	63.5
KRG89709	Soybean	plastid	22.22	51.75

Protein Annotations

EntrezGene:100245692	wikigene:100245692	MapMan:13.6.1.2.1	Gene3D:3.40.50.300	ProteinID:CCB47841	ProteinID:CCB47841.1
InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	UniProt:F6H6D0	EMBL:FN595243	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016887	EntrezGene:LOC100245692	wikigene:LOC100245692	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PFAM:PF01656
PANTHER:PTHR43384	PANTHER:PTHR43384:SF6	SUPFAM:SSF52540	TIGR:TC63057	TIGRFAMs:TIGR01968	UniParc:UPI00015CBE22
ArrayExpress:VIT_16s0050g01070	EnsemblPlantsGene:VIT_16s0050g01070	EnsemblPlants:VIT_16s0050g01070.t01	unigene:Vvi.15444	RefSeq:XP_002273527	RefSeq:XP_002273527.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:17997150..17998539

Molecular Weight (calculated)

36257.2 Da

IEP (calculated)

8.307

GRAVY (calculated)

-0.047

Length

333 amino acids

Sequence
(BLAST)

001: MLSPQLLPKT PNPLSSIYTP NPFKSLNPKT LKPSKPNFKP KPHNPTTIQS VLQWNRKPQL AGDTPRVVVI TSGKGGVGKT TTTANVGLSL ARLGFSVVAI
101: DADVGLRNLD LLLGLENRVN YTVVEVLNGD CRLDQALVRD KRWSNFELLC ISKPRSKLPI GFGGKALTWL VDALKAREEG SPDFILIDCP AGIDAGFITA
201: IAPANEAVLV TTPDITSLRD ADRVTGLLEC DGIKDIKMIV NRVRTDMIKG EDMMSVLDVQ EMLGLALLGV IPEDSEVIRS TNRGYPLVLN KPPTLAGLAF
301: EQAAWRLVEQ DSMQAVVVEE EPKKRGFFSF FGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.