CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89709
KRH08863
KRH36043
KRH38382
KRH48126
KRH70831
KRH74964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	KRH70831	AT1G69390.1	16014621
AT5G24020.1	KRH74964	AT1G69390.1	16014621
AT5G24020.1	KRH70831	AT1G69390.1	16146521
AT5G24020.1	KRH74964	AT1G69390.1	16146521
AT5G24020.1	KRH36043	AT1G75010.1	17304239
AT5G24020.1	KRG89709	AT5G24020.1	16014621
AT5G24020.1	KRH08863	AT5G24020.1	16014621
AT5G24020.1	KRH38382	AT5G24020.1	16014621
AT5G24020.1	KRH48126	AT5G24020.1	16014621
AT5G24020.1	KRG89709	AT5G24020.1	16146521
AT5G24020.1	KRH08863	AT5G24020.1	16146521
AT5G24020.1	KRH38382	AT5G24020.1	16146521
AT5G24020.1	KRH48126	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08863	Soybean	plastid	80.0	93.83
Bra009723.1-P	Field mustard	cytosol	41.32	90.23
KRH48126	Soybean	extracellular	41.05	82.98
VIT_16s0050g01070.t01	Wine grape	plastid	71.58	81.68
CDX88064	Canola	plastid	68.42	79.51
CDX80403	Canola	plastid	68.16	78.96
AT5G24020.1	Thale cress	plastid	67.63	78.83
PGSC0003DMT400026256	Potato	plastid	68.68	78.61
Solyc03g007980.1.1	Tomato	plastid	68.42	78.55
GSMUA_Achr9P23510_001	Banana	plastid	58.42	76.03
CDY11108	Canola	mitochondrion	14.47	70.51
Os06t0106000-01	Rice	plastid	54.74	67.97
TraesCS7D01G014700.1	Wheat	plastid	55.26	67.31
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	55.0	67.2
TraesCS4A01G474300.1	Wheat	plastid	55.26	67.09
EER87699	Sorghum	plastid	54.74	66.67
Zm00001d035898_P001	Maize	plastid	54.74	66.03
KRG89709	Soybean	plastid	23.68	62.94
HORVU7Hr1G001800.1	Barley	plastid	55.53	62.61

Protein Annotations

EMBL:ACUP02005804	EnsemblPlants:KRH38382	EnsemblPlantsGene:GLYMA_09G132300	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016887	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PANTHER:PTHR43384
PANTHER:PTHR43384:SF6	PFAM:PF01656	ProteinID:KRH38382	ProteinID:KRH38382.1	SEG:seg	SUPFAM:SSF52540
TIGRFAMs:TIGR01968	UniParc:UPI000295C660	UniProt:K7LDM3	MapMan:13.6.1.2.1	:	:

Description

hypothetical protein

Coordinates

chr9:-:32979511..32981213

Molecular Weight (calculated)

41179.2 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.076

Length

380 amino acids

Sequence
(BLAST)

001: MFTNVKEEEK KKQKKKELTQ PKPKVSISST SISSGHSLSH CASSSSLSPS LLFPMPSLHL LPGATTAPNS TFLLRPHSPL LPSKTLTPKK PKPKPPSALL
101: QWNRKPELSG SIPRVTVITS GKGGVGKTTT TANIGLSLAR LGFSVVAIDA DVGLRNLDLL LGLENRVNYT VIEVLNGDCR LDQALVRDKR WSNFELLCIS
201: KPRSKLPLGF GGKALTWLVD ALKARPQGSP DFILIDCPAG IDAGFITAIT PANEAVLITT PDITSLRDAD RVTGLLECDG IRDIKMIVNR VRTDMIKGED
301: MLSVLDVQEM LGLPLLGAIP EDTEVIRSTN RGYPLVLNKP PTLAGLAFEQ AAWRLVEQDS MQAVVVEEQP KRGFFSFFGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.