Factsheet for Solyc03g007980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007880.2.1
Solyc03g007980.1.1
Solyc05g012710.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	Solyc05g012710.2.1	AT1G69390.1	16014621
AT5G24020.1	Solyc05g012710.2.1	AT1G69390.1	16146521
AT5G24020.1	Solyc01g007880.2.1	AT1G75010.1	17304239
AT5G24020.1	Solyc03g007980.1.1	AT5G24020.1	16014621
AT5G24020.1	Solyc03g007980.1.1	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026256	Potato	plastid	97.89	97.59
Bra009723.1-P	Field mustard	cytosol	48.04	91.38
VIT_16s0050g01070.t01	Wine grape	plastid	86.4	85.89
CDX88064	Canola	plastid	81.27	82.26
AT5G24020.1	Thale cress	plastid	80.97	82.21
KRH08863	Soybean	plastid	79.46	81.17
CDX80403	Canola	plastid	80.36	81.1
GSMUA_Achr9P23510_001	Banana	plastid	69.18	78.42
KRH48126	Soybean	extracellular	44.41	78.19
CDY11108	Canola	mitochondrion	16.31	69.23
KRH38382	Soybean	cytosol	78.55	68.42
Os06t0106000-01	Rice	plastid	61.63	66.67
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	61.93	65.92
TraesCS7D01G014700.1	Wheat	plastid	61.93	65.71
TraesCS4A01G474300.1	Wheat	plastid	61.93	65.5
EER87699	Sorghum	plastid	61.33	65.06
Zm00001d035898_P001	Maize	plastid	61.03	64.13
HORVU7Hr1G001800.1	Barley	plastid	63.44	62.31
KRG89709	Soybean	plastid	21.15	48.95

Protein Annotations

EnsemblPlants:Solyc03g007980.1.1	EnsemblPlantsGene:Solyc03g007980.1	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016887	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PANTHER:PTHR43384	PANTHER:PTHR43384:SF6
PFAM:PF01656	SEG:seg	SUPFAM:SSF52540	TIGRFAMs:TIGR01968	UniParc:UPI0002768507	UniProt:K4BEL9
MapMan:13.6.1.2.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:2465101..2466096

Molecular Weight (calculated)

36291.3 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.015

Length

331 amino acids

Sequence
(BLAST)

001: MLSLQPLNPK PSSLYSSTFT PPNSLSPKTL KPIPAFRPSR NFYPSIHSML QYNRKPQLAG DTPRVVVITS GKGGVGKTTT TANIGLSLAR LGFSVVAIDC
101: DVGLRNLDLL LGLENRVNYT VVEVLNGDCR LDQALVRDKR WSNFELLCIS KPRSKLPIGF GGKALVWLVD ALKARDEGGP DFIIIDCPAG IDAGFITAIT
201: PANEAVLVTT PDITSLRDAD RVTGLLECDG IRDIKMIVNR VRTDMIKGED MMSVLDVQEM LGLPLLGVIP EDSEVIRSTN RGYPLVLNKP PALAGLAFEQ
301: AAWRLVEQDS METVMMEEEP KKRGFFSFFG R

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.