Factsheet for Solyc01g007880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007880.2.1
Solyc03g007980.1.1
Solyc03g098610.2.1
Solyc04g081070.2.1
Solyc07g065050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75010.1	Solyc01g007880.2.1	AT1G75010.1	17304239
AT1G75010.1	Solyc03g098610.2.1	AT3G19180.1	19564892
AT1G75010.1	Solyc03g007980.1.1	AT5G24020.1	17304239
AT1G75010.1	Solyc04g081070.2.1	AT5G42480.1	19453460
AT1G75010.1	Solyc07g065050.2.1	AT5G55280.1	17304239

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02140.t01	Wine grape	mitochondrion	45.2	50.72
CDY37266	Canola	mitochondrion	4.1	47.06
KRH36043	Soybean	plastid	43.15	43.54
Bra015875.1-P	Field mustard	plastid	39.18	41.41
AT1G75010.1	Thale cress	plastid	39.18	41.3
Os09t0555600-01	Rice	plastid	34.7	36.62
Zm00001d021407_P001	Maize	plastid	34.96	36.16
OQU89910	Sorghum	plastid	35.47	35.83
TraesCS5A01G356200.1	Wheat	plastid	33.67	35.83
TraesCS5D01G365000.1	Wheat	plastid	33.16	35.38
TraesCS5B01G358700.1	Wheat	plastid	33.16	35.29
HORVU5Hr1G088120.2	Barley	plastid	33.67	33.12
GSMUA_Achr2P03680_001	Banana	nucleus	37.9	26.1

Protein Annotations

MapMan:13.6.1.2.4	Gene3D:2.20.110.10	Gene3D:3.40.50.1440	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009536	GO:GO:0009570	GO:GO:0009707	GO:GO:0009987	GO:GO:0010020
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0035452	GO:GO:0043621	InterPro:IPR036525
UniProt:K4ASY6	InterPro:MORN	PFAM:PF02493	PANTHER:PTHR23084	SMART:SM00698	SUPFAM:SSF52490
SUPFAM:SSF82185	EnsemblPlantsGene:Solyc01g007880.2	EnsemblPlants:Solyc01g007880.2.1	InterPro:Tubulin/FtsZ_GTPase_sf	UniParc:UPI0002762B16	SEG:seg

Description

Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Source:Projected from Arabidopsis thaliana (AT1G75010) UniProtKB/Swiss-Prot;Acc:Q6F6B5]

Coordinates

chr1:-:2041549..2055134

Molecular Weight (calculated)

86464.0 Da

IEP (calculated)

5.113

GRAVY (calculated)

-0.388

Length

781 amino acids

Sequence
(BLAST)

001: MDLLLPIPAR LSTFSRAAVC TFSPANPFNS NSFTCRKVRF RVSCCTKPVR VETNSNFNRR DGNNCEVNRE DDDTGEAGGL KNVWEETEFV EVFGIGSRKD
101: ALLEFCLASP YLSPALRFWN VLVKDSEKVL LQEKVPIEDV SSRIVEVPSA INSCSKAVIL VASAAYGTDH VPALDIIRKL KSRNGLAVGI ILKPFSFEGR
201: RRYDEVTDLI DKLQKHATVC IVIDTDGLLK KDLLTLDEAL KTSYNAVLMA VNAISILMSE DHIKLLDATD CGTKELSGPE LIKILESYKE AKTGFGAGYN
301: VETSILRAVY DCPFLGLGVK GSNGVVICII ASSGVVNSSD VRSILRTFRQ TTGCNGDIVI SIVQEANLEP NLIVTTVVTC GYATQEPSEK SSLFSRLAQH
401: IPFIFNILKK PDPSLLTAKE SEIDESPETS DMAEFVSMDN TPEDMSIYSG ELPALFPTNG EETSFLRDYN NVSDERKIEL SNSDVATEAP LVFKRELLTR
501: WNPGPGKDTS EGLAAEGTEN SEGKNTVDNT STYKLPVGVK HKEQLQTSAG SSNSRNSGRK SEESKVAQPR DISNLSQDEV DEDYSEIISD VYNSNLPLVE
601: KSYTSGPKRK GVLSTRAASM LEAERDSKKK WIPVVEMKYR GGIYRGRIEG GLPEGKGCLS LEDGSKYDGM WRYGKKSGLG TFYFNNGDTY RGSWRDDLMH
701: GKGWFYFHTG DRWFANFWKG KANGEARFYS KLGDVFFGHF KDGLRHGQFL CINIDGTRSI EEWDEGLLQS RKNLDSDAET G

Best Arabidopsis Sequence Match ( AT1G75010.1 )
(BLAST)

001: MPISMELPVF STLRVPLFSR LALLPTFGVP FSSLGATTRL NCTSRKARRI CVMCLVRDSA PIETCERAGE DGSDEFIEVL VIGSRKESIM DSCLDSPFPS
101: LPLRFWSISK DSSGGLVLQQ RLNHQDNALK TMNPIELLQS RPRAFILVAS AGYGSDQVEA INILSAVRSG GNLAVAVLLK PFSFEGRKRL EEVNELARKL
201: QQHTNFCIDI DIEVLLQKDL VTLDEALRNA NNAVSMAINA ASALISGMHG NFIDVMHKDL KELEGSEVKT ILESYKEAKV GFGVGHNLKT SILRAIYDCP
301: FFRPGLKDLN AIICIVASSV PLQKKDVKTI LRTFRQTMEY TGDIIVSTVH EPDLEPKVRV TTFFILSSSE VETSNKGNIF SGLVPFVLNI FTRYRSQLQK
401: ETNIGLGETP VSIKDSADST DVKTSNQNIE EFEIDSEDLL EVSENGDDSE YPLKEGEPSR NSRLDLKDEN VEDFGAIQRE PIANWSMDQG YQIEQKWQAD
501: SGDTAVLSLG IVNLPVGVRP SKKLNSNLSV ASQLSRKADS REESFFNPNG STKDSSDTAS TLLSEKYADF TKQRNLSARA SSMLEAERDS SKRWSPILEM
601: QYRGGLFKGR CQGGLPEGKG RLVLGDGSIY DGMWHNGKRS GLGTFYFKNG DVFQGTWRED LIHGKGWFYF HKGDRWFANF WKGKASGEGR FYSKSGEIFF
701: GHFKDGWRHG QFLCIDLDGT RYSETWDDGV LIDRKQVDAG D

Arabidopsis Description

ARC3Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6F6B5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.