CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89709
KRG98668
KRH05905
KRH08863
KRH09390
KRH14302
KRH17386
KRH36043
KRH38382
KRH38887
KRH46262
KRH48126
KRH73828

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75010.1	KRH36043	AT1G75010.1	17304239
AT1G75010.1	KRH09390	AT3G19180.1	19564892
AT1G75010.1	KRH38887	AT3G19180.1	19564892
AT1G75010.1	KRG89709	AT5G24020.1	17304239
AT1G75010.1	KRH08863	AT5G24020.1	17304239
AT1G75010.1	KRH38382	AT5G24020.1	17304239
AT1G75010.1	KRH48126	AT5G24020.1	17304239
AT1G75010.1	KRH05905	AT5G42480.1	19453460
AT1G75010.1	KRH17386	AT5G42480.1	19453460
AT1G75010.1	KRG98668	AT5G55280.1	17304239
AT1G75010.1	KRH14302	AT5G55280.1	17304239
AT1G75010.1	KRH46262	AT5G55280.1	17304239
AT1G75010.1	KRH73828	AT5G55280.1	17304239

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02140.t01	Wine grape	mitochondrion	48.71	54.17
AT1G75010.1	Thale cress	plastid	41.34	43.18
Solyc01g007880.2.1	Tomato	plastid	43.54	43.15
Bra015875.1-P	Field mustard	plastid	39.02	40.87
CDX73132	Canola	plastid	39.41	39.71
CDY64472	Canola	endoplasmic reticulum, extracellular	39.28	39.12
Os09t0555600-01	Rice	plastid	35.27	36.89
Zm00001d021407_P001	Maize	plastid	35.79	36.69
TraesCS5D01G365000.1	Wheat	plastid	33.98	35.93
TraesCS5B01G358700.1	Wheat	plastid	33.85	35.69
TraesCS5A01G356200.1	Wheat	plastid	33.72	35.56
OQU89910	Sorghum	plastid	35.27	35.32
HORVU5Hr1G088120.2	Barley	plastid	35.66	34.76
GSMUA_Achr2P03680_001	Banana	nucleus	40.7	27.78

Protein Annotations

EntrezGene:100306163	MapMan:13.6.1.2.4	Gene3D:2.20.110.10	Gene3D:3.40.50.1440	EMBL:ACUP02006718	EnsemblPlantsGene:GLYMA_10G280500
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009536	GO:GO:0009570
GO:GO:0009707	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787
GO:GO:0035452	GO:GO:0043621	InterPro:IPR036525	UniProt:K7LLW6	EnsemblPlants:KRH36043	ProteinID:KRH36043
ProteinID:KRH36043.1	InterPro:MORN	PFAM:PF02493	PRINTS:PR00423	PANTHER:PTHR23084	PANTHER:PTHR23084:SF205
SMART:SM00698	SUPFAM:SSF52490	SUPFAM:SSF82185	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000294E1FF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50163026..50173048

Molecular Weight (calculated)

86806.8 Da

IEP (calculated)

6.744

GRAVY (calculated)

-0.386

Length

774 amino acids

Sequence
(BLAST)

001: MELSAFSSFK AVSDASLFPF SSNQLWCRCS LPLRRRDYGL CWSPKSKPCF RIRMCSEKAS SSNGYGGIDC GETTNSDFVE VIVIGSRKDA VFDFCLNSPF
101: QLPSPRFWNI LMKESEEVQL QQRSVEEESH PRLVKAPLFL KSCSKTIVLV ASAGYGLYHT VAADIFETVR SRNGLTVAIV LKPFRFEGLK RQDEVKALMQ
201: KLKENTHLLI EIDIDALLEK DLLTLDEAMK TANDAVLLAI KAVSVLKSEM HKKFIDRLND GMKEASSSEI NKILESYKEA GIGFGAAYNI KASILQSIFD
301: SPFLGVRLKD PNSLVICTLA CSEPINDSDI AIFLHTFRQT TKYTRDIIIS TIHDHAVEPN LFITTVLTLG CLNVQRSSQN GGILSRLALH FPLIFSFWGR
401: HNQQQVGTGK QTEVFPHEVM SSDDIDERTN RITSDNIDNN LDKYYEEPAL RNNSSKLPTS RDSGKNGEDL SDTTSNYNIL YDSITEGVAL GDSAFQREQL
501: ENWNLGPGFE VAKEWAQEKA ADATPAVDNL SIFHLPVGVR HSEDLKDCLE ISFLTKQLEP DTDNDVKTQT LNGGMSPWSA ATDASLEAVM EFASSLLKGK
601: NANKSKKDGV LSVRAASMLE AERDLSKKWS PVVEMQYRGG RYKGRCQGGL PEGKGRLVLR DGSIYDGLWR YGKRSGPGSF YFKNGDMFQG SWRDDVIHGK
701: GWFYFRTGDR WFANFWKGKA NGEGRFYTKS GDAFFGNFKD GWRHGQFLCI NANGTRYTEI WENGVLVDGK YLDR

Best Arabidopsis Sequence Match ( AT1G75010.1 )
(BLAST)

001: MPISMELPVF STLRVPLFSR LALLPTFGVP FSSLGATTRL NCTSRKARRI CVMCLVRDSA PIETCERAGE DGSDEFIEVL VIGSRKESIM DSCLDSPFPS
101: LPLRFWSISK DSSGGLVLQQ RLNHQDNALK TMNPIELLQS RPRAFILVAS AGYGSDQVEA INILSAVRSG GNLAVAVLLK PFSFEGRKRL EEVNELARKL
201: QQHTNFCIDI DIEVLLQKDL VTLDEALRNA NNAVSMAINA ASALISGMHG NFIDVMHKDL KELEGSEVKT ILESYKEAKV GFGVGHNLKT SILRAIYDCP
301: FFRPGLKDLN AIICIVASSV PLQKKDVKTI LRTFRQTMEY TGDIIVSTVH EPDLEPKVRV TTFFILSSSE VETSNKGNIF SGLVPFVLNI FTRYRSQLQK
401: ETNIGLGETP VSIKDSADST DVKTSNQNIE EFEIDSEDLL EVSENGDDSE YPLKEGEPSR NSRLDLKDEN VEDFGAIQRE PIANWSMDQG YQIEQKWQAD
501: SGDTAVLSLG IVNLPVGVRP SKKLNSNLSV ASQLSRKADS REESFFNPNG STKDSSDTAS TLLSEKYADF TKQRNLSARA SSMLEAERDS SKRWSPILEM
601: QYRGGLFKGR CQGGLPEGKG RLVLGDGSIY DGMWHNGKRS GLGTFYFKNG DVFQGTWRED LIHGKGWFYF HKGDRWFANF WKGKASGEGR FYSKSGEIFF
701: GHFKDGWRHG QFLCIDLDGT RYSETWDDGV LIDRKQVDAG D

Arabidopsis Description

ARC3Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6F6B5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.