CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98668
KRH05905
KRH14302
KRH17386
KRH36043
KRH46262
KRH73828

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	KRH36043	AT1G75010.1	19453460
AT5G42480.1	KRH05905	AT5G42480.1	16146521
AT5G42480.1	KRH17386	AT5G42480.1	16146521
AT5G42480.1	KRG98668	AT5G55280.1	16146521
AT5G42480.1	KRH14302	AT5G55280.1	16146521
AT5G42480.1	KRH46262	AT5G55280.1	16146521
AT5G42480.1	KRH73828	AT5G55280.1	16146521
AT5G42480.1	KRG98668	AT5G55280.1	19453460
AT5G42480.1	KRH14302	AT5G55280.1	19453460
AT5G42480.1	KRH46262	AT5G55280.1	19453460
AT5G42480.1	KRH73828	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17386	Soybean	plastid	91.67	92.82
VIT_02s0033g00060.t01	Wine grape	mitochondrion	64.05	64.62
Solyc04g081070.2.1	Tomato	plastid	61.57	60.44
PGSC0003DMT400009646	Potato	plastid	61.19	59.64
AT5G42480.1	Thale cress	plastid	55.85	56.05
Bra033637.1-P	Field mustard	mitochondrion, plastid	54.48	55.94
CDY22390	Canola	mitochondrion, plastid	54.48	55.94
CDY61131	Canola	plastid	53.98	55.5
EES06197	Sorghum	plastid	47.89	50.52
TraesCSU01G117700.1	Wheat	plastid	48.13	50.39
Os02t0122400-01	Rice	plastid	48.13	50.33
TraesCS6B01G089500.2	Wheat	plastid	47.64	50.13
TraesCS6A01G066200.3	Wheat	plastid	47.51	49.48
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	53.48	49.03
HORVU6Hr1G012020.11	Barley	nucleus	48.51	47.39
Zm00001d053923_P003	Maize	plastid	46.14	37.1
KRH38887	Soybean	plastid	20.27	20.07
KRH09390	Soybean	plasma membrane, plastid	20.27	20.07

Protein Annotations

EMBL:ACUP02010784	EnsemblPlants:KRH05905	EnsemblPlantsGene:GLYMA_17G255300	EntrezGene:100778956	InterPro:DUF4101	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	PFAM:PF13355	ProteinID:KRH05905	ProteinID:KRH05905.1
SEG:seg	SUPFAM:SSF46565	UniParc:UPI0006EDBCDE	UniProt:A0A0R0FIM1	MapMan:13.6.1.2.5	:

Description

hypothetical protein

Coordinates

chr17:-:40931365..40935568

Molecular Weight (calculated)

88102.0 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.116

Length

804 amino acids

Sequence
(BLAST)

001: METVLPRAGL AFCTPHPTTT LQRFTKPNKL LRSSSRGGAS LSATSKWAER LIADFQFLGD AATSTVTLSP SSVPPSLDPP ERYVSIPLDL YRVLGAELHF
101: LGDGIRRAYE AKFSKPPQYA FSNDALISRR QILQAACETL ADPASRREYN QGLVDDHEDA AILTQIPFDK VPGALCVLQE AGETELVLEI GQGLLRERLP
201: KTFKQDVVLA MALAFVDVSR DAMALSPPDF IAACEMLERA LKLLLEEGAT SLAPDLQAQI DETLEEITPH CVLELLALPL DDEHRARRGE GLLGVRNILW
301: AVGGGGAAAF AGGFTREDFM NESFLHMTAA EQVELFVATP SNIPAESFEA YGVALALVAQ AFVGKKPHLI QDADNLFQQL QQTKITAVRN APSVYIPKEI
401: REIDFALERG LCALLVGELD QCRSWLGLDT DSSPYRNPSI IEFIMENEKG DEDSDLPGLC KLLETWLMEV VFPRFRDTKE TRFKLGDYYD DSTVLRYLER
501: LEGGSHSPLA AAAAIVKIGA EATAVISQVQ ASVMNALKKV FPVGSEDQIV KHQVNGVNED FGFSESENPV ILSDQDSSVN AEVSGIKNTT ETSEGEFITE
601: EIKNASVQIM CAGVVIGLVT LVGLKFLPSR NGLPMLCKTT GSAMASDTIN LGSLGDEEKV EQLPKMDARV AEALVRKWQS VKSEAFGPDH CMGRLHEAML
701: LEFWKAGIVL DGEMLKIWTD RAGEIAERGW SYDYTLEDLN IDSVTISQNG RRAVVETTLK ESIHLNAIGH PQHDASNSRT YTTRYEMSFT GPGWKIVEGA
801: VLES

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.