Factsheet for PGSC0003DMT400009646

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009646
PGSC0003DMT400057147

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	PGSC0003DMT400009646	AT5G42480.1	16146521
AT5G42480.1	PGSC0003DMT400057147	AT5G55280.1	16146521
AT5G42480.1	PGSC0003DMT400057147	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081070.2.1	Tomato	plastid	92.73	93.41
VIT_02s0033g00060.t01	Wine grape	mitochondrion	67.76	70.14
KRH17386	Soybean	plastid	60.24	62.59
KRH05905	Soybean	plastid	59.64	61.19
Bra033637.1-P	Field mustard	mitochondrion, plastid	56.36	59.39
CDY22390	Canola	mitochondrion, plastid	56.36	59.39
CDY61131	Canola	plastid	55.88	58.95
AT5G42480.1	Thale cress	plastid	56.24	57.93
EES06197	Sorghum	plastid	50.06	54.2
Os02t0122400-01	Rice	plastid	49.94	53.58
TraesCSU01G117700.1	Wheat	plastid	48.97	52.6
TraesCS6A01G066200.3	Wheat	plastid	49.09	52.46
TraesCS6B01G089500.2	Wheat	plastid	47.76	51.57
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	54.67	51.43
HORVU6Hr1G012020.11	Barley	nucleus	49.33	49.45
Zm00001d053923_P003	Maize	plastid	48.48	40.0
PGSC0003DMT400026299	Potato	cytosol	18.67	18.55

Protein Annotations

MapMan:13.6.1.2.5	InterPro:DUF4101	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020
GO:GO:0016043	GO:GO:0031357	GO:GO:0043621	UniProt:M0ZWP9	PFAM:PF13355	EnsemblPlantsGene:PGSC0003DMG400003765
PGSC:PGSC0003DMG400003765	EnsemblPlants:PGSC0003DMT400009646	PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	UniParc:UPI0002950E4B	SEG:seg

Description

Heat shock protein binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003765]

Coordinates

chr4:-:70479254..70484321

Molecular Weight (calculated)

90177.3 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.195

Length

825 amino acids

Sequence
(BLAST)

001: MEALTQLSFG ICTPRLSSPF QLAAAGGKKP PRLNAVNGGA SSVTGGTSSL PTNFSASKWA DRLLADFQFL PSTTTSDSSD FQNSTSTTSV TTIPPPVAPS
101: DRHISMPIDF YRVLGAEAHF LGDGIRRCYD ARITKPPQYG YSQEALIGRR QILQAACETL VDSTSRREYN QGLAQHEFDT ILTPVPWDKV PGAMCVLQEA
201: GETEVVLQIG ESLLKERMPK SFKQDVVLAM ALAYVDHSRD AMALSPPDFV QGCELLERAL KLLQEEGASN LALDLQSQID ETLEEINPRY VLELLAFPLG
301: DEYRMKRAEG LQGVRNILWA VGGGGAAAIS GGFTREDFMN EAFLQMTASE QVDLFVATPS NIPAESFEVY GVALALVAQA FVGKKPHLIQ DADNLFQQLQ
401: QTKVTAYGSS VSVYTVRENR EIDFALERGL CSLLVGEVDG CRSWLGLDSE DSPYRDPSIV TFVAEHSKDD NENDLLPGLC KLLETWLMEV VFPRFRETED
501: VTFKLGDYYD DPTVLRYLER LEGGGASPLA AAAAIARIGA EATAVLDSVK ASAIQALQKV FPAGDGEGSV RRYGDNEMNE FDIAKPFEDL GELRDQNNFI
601: TTVGDPERKS SNYQEQDVIT DRIKDASVKI MCAGVAIGFL TLVGLKLSSF RHGSSVQHSA SATGSAIASD VINVEILSAT ADASASPVEN PLEVPRMDAR
701: LAESIVRKWQ NIKSQSLGTD HCLNRLSEVL DGQMLKIWTD RATEIAQHGW FWEYKLLNLA IDSVTVSADG RRATVEATLE ESASLTDVAH PENNDSYSTI
801: YTTRYDMSWA NSGWKIVEGA VLKSR

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.