Factsheet for Os02t0122400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0122400-01
Os04t0665400-01
Os09t0555600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	Os09t0555600-01	AT1G75010.1	19453460
AT5G42480.1	Os02t0122400-01	AT5G42480.1	16146521
AT5G42480.1	Os04t0665400-01	AT5G55280.1	16146521
AT5G42480.1	Os04t0665400-01	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06197	Sorghum	plastid	82.05	82.81
TraesCSU01G117700.1	Wheat	plastid	81.01	81.12
TraesCS6A01G066200.3	Wheat	plastid	81.27	80.96
TraesCS6B01G089500.2	Wheat	plastid	79.84	80.37
HORVU6Hr1G012020.11	Barley	nucleus	82.96	77.52
Zm00001d053923_P003	Maize	plastid	77.24	59.4
VIT_02s0033g00060.t01	Wine grape	mitochondrion	56.31	54.33
Solyc04g081070.2.1	Tomato	plastid	53.32	50.06
PGSC0003DMT400009646	Potato	plastid	53.58	49.94
KRH17386	Soybean	plastid	51.24	49.62
CDY61131	Canola	plastid	50.33	49.49
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	55.66	48.8
CDY22390	Canola	mitochondrion, plastid	49.67	48.79
Bra033637.1-P	Field mustard	mitochondrion, plastid	49.67	48.79
KRH05905	Soybean	plastid	50.33	48.13
AT5G42480.1	Thale cress	plastid	48.89	46.94
Os04t0675700-00	Rice	cytosol	3.9	23.08

Protein Annotations

MapMan:13.6.1.2.5	EntrezGene:4328130	UniProt:B9F267	ProteinID:BAS76721.1	InterPro:DUF4101	ProteinID:EEE56207.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009706
GO:GO:0009941	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0031357
GO:GO:0043621	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlantsGene:Os02g0122400	EnsemblPlants:Os02t0122400-01	PFAM:PF13355
PANTHER:PTHR33925	PANTHER:PTHR33925:SF3	SUPFAM:SSF46565	UniParc:UPI00018EEFE2	RefSeq:XP_015626724.1	SEG:seg

Description

Similar to Plastid division protein. (Os02t0122400-01)

Coordinates

chr2:-:1178891..1182734

Molecular Weight (calculated)

85021.2 Da

IEP (calculated)

4.975

GRAVY (calculated)

-0.251

Length

769 amino acids

Sequence
(BLAST)

001: MEGFHNLLAR PNSAPFAFSL PRPRPRPRRR PPPHPSAACR AASRWAERLF ADFHLLPTAA PSDPPSPAPA PAAAPSASPF VPLFPDAAER SLPLQVDFYK
101: VLGAEPHFLG DGIRRAFEAR IAKPPQYGYS TDALVGRRQM LQIAHDTLMN QNSRTQYDRA LSENREEALT MDIAWDKVPG VLCALQEAGE ALAVLVTGEQ
201: LLLDRPPKRF KQDVVLAMAL AYVDLSRDAM AASPPDVIGC CEVLERALKL LQEDGASNLA PDLLSQIDET LEEITPRCVL ELLSLPIDTE HHKKRQEGLQ
301: GARNILWSVG RGGIATVGGG FSREAFMNEA FLRMTSIEQM DFFSKTPNSI PPEWFEIYNV ALAHVAQAII SKRPQFIMMA DDLFEQLQKF NIGSHYAYDN
401: EMDLALERAF CSLLVGDVSK CRMWLGIDNE SSPYRDPKIL EFIVTNSSIS EENDLLPGLC KLLETWLIFE VFPRSRDTRG MQFRLGDYYD DPEVLSYLER
501: MEGGGASHLA AAAAIAKLGA QATAALGTVK SNAIQAFNKV FPLIEQLDRS AMENTKDGPG GYLENFDQEN APAHDSRNAA LKIISAGALF ALLAVIGAKY
601: LPRKRPLSAI RSEHGSVAVA NSVDSTDDPA LDEDPVHIPR MDAKLAEDIV RKWQSIKSKA LGPEHSVASL QEVLDGNMLK VWTDRAAEIE RHGWFWEYTL
701: SDVTIDSITI SLDGRRATVE ATIDEAGQLT DVTEPRNNDS YDTKYTTRYE MAFSKLGGWK ITEGAVLKS

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.