Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0675700-00 | |
| Os09t0555600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19180.1 | Os09t0555600-01 | AT1G75010.1 | 19564892 |
| AT3G19180.1 | Os04t0675700-00 | AT3G19180.1 | 19564892 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G022620.1 | Barley | cytosol | 3.85 | 5.62 |
| HORVU1Hr1G043130.1 | Barley | cytosol | 3.85 | 5.62 |
| HORVU5Hr1G017780.1 | Barley | cytosol | 3.85 | 5.62 |
| HORVU6Hr1G028890.1 | Barley | cytosol | 3.85 | 5.62 |
| HORVU5Hr1G052680.1 | Barley | cytosol | 3.08 | 4.6 |
| HORVU5Hr1G052700.1 | Barley | cytosol | 3.08 | 4.6 |
| HORVU4Hr1G064930.1 | Barley | cytosol | 3.08 | 4.49 |
| HORVU6Hr1G023350.1 | Barley | cytosol | 3.08 | 4.49 |
| Os02t0122400-01 | Rice | plastid | 23.08 | 3.9 |
| HORVU2Hr1G119920.8 | Barley | cytosol | 20.77 | 3.72 |
| TraesCS2A01G555400.1 | Wheat | plastid | 20.77 | 3.32 |
| TraesCS2B01G588400.1 | Wheat | plastid | 20.77 | 3.29 |
| EES13095 | Sorghum | plastid | 20.0 | 3.26 |
| TraesCS2D01G559100.1 | Wheat | plastid | 20.0 | 3.19 |
| Zm00001d001844_P001 | Maize | plastid | 19.23 | 3.12 |
| VIT_17s0053g00090.t01 | Wine grape | plastid | 18.46 | 2.91 |
| GSMUA_Achr1P15150_001 | Banana | plastid | 17.69 | 2.78 |
| PGSC0003DMT400026299 | Potato | cytosol | 17.69 | 2.77 |
| Solyc03g098610.2.1 | Tomato | cytosol | 17.69 | 2.77 |
| GSMUA_Achr3P14180_001 | Banana | mitochondrion | 16.92 | 2.64 |
| AT3G19180.1 | Thale cress | plastid | 16.15 | 2.56 |
| CDX99260 | Canola | plastid | 15.38 | 2.48 |
| CDX92306 | Canola | plasma membrane | 15.38 | 2.48 |
| Bra022392.1-P | Field mustard | plasma membrane, plastid | 15.38 | 2.48 |
| KRH09390 | Soybean | plasma membrane, plastid | 13.85 | 2.22 |
| KRH38887 | Soybean | plastid | 13.08 | 2.09 |
Protein Annotations
| EnsemblPlants:Os04t0675700-00 | EnsemblPlantsGene:Os04g0675700 | InterPro:FBD | PANTHER:PTHR31639 | PANTHER:PTHR31639:SF21 | PFAM:PF08387 |
| ProteinID:BAS91619.1 | UniParc:UPI000393BA05 | UniProt:A0A0P0WGE3 | MapMan:35.2 | : | : |
Description
Hypothetical conserved gene. (Os04t0675700-00)
Coordinates
chr4:-:34501609..34502001
Molecular Weight (calculated)
15151.1 Da
IEP (calculated)
7.303
GRAVY (calculated)
-0.703
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MWMLNCRHQP YREEDGELRI VGPPHQHAHL KRVRISGFFG HKDQVELALH ILRSSMTLEQ MVITPKLEIG NDLAFSDPCA DEYEKKHYVD GHRVATEFVC
101: KTDHRNVVTV ERVVPEPADG EVERKRRRAN
101: KTDHRNVVTV ERVVPEPADG EVERKRRRAN
001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITEDEDMLP
101: QEMFVSKTLV KLKIRNDRCV DWWCGKGGTS LPMLKSLYID SDLILWGKMK RFLSSFPVLE ELRMASMEWK ESHETVSSAS LRKLSILGTG CEDYVNPKSI
201: SFDTPSLLYL NYSDLVAEDY PLVNMGKLLE ARINLIVKDD QIKRVREPNN DLLQDDAGNV VLQFGNVVKL MNGIQNIQIL YLTADTLEVL SLCCESMPVF
301: NNLKTLGIKS EEGRGWQAVP ALLRNCPHLE YLIIEGLLHN VTDKCGDACD CISREDKGRS LASCPVKKVE IQGFRGTMRE INMIGHFLRS FKCLKEMGIF
401: PEEEGPTNFE NPGAFEYVEK ILKLYNEISN CDVYFLVWGY MRRKWTTQ
101: QEMFVSKTLV KLKIRNDRCV DWWCGKGGTS LPMLKSLYID SDLILWGKMK RFLSSFPVLE ELRMASMEWK ESHETVSSAS LRKLSILGTG CEDYVNPKSI
201: SFDTPSLLYL NYSDLVAEDY PLVNMGKLLE ARINLIVKDD QIKRVREPNN DLLQDDAGNV VLQFGNVVKL MNGIQNIQIL YLTADTLEVL SLCCESMPVF
301: NNLKTLGIKS EEGRGWQAVP ALLRNCPHLE YLIIEGLLHN VTDKCGDACD CISREDKGRS LASCPVKKVE IQGFRGTMRE INMIGHFLRS FKCLKEMGIF
401: PEEEGPTNFE NPGAFEYVEK ILKLYNEISN CDVYFLVWGY MRRKWTTQ
Arabidopsis Description
F-box/LRR-repeat protein At3g58930 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXW6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.