Factsheet for GSMUA_Achr1P15150_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
peroxisome 1
cytosol 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P15150_001
GSMUA_Achr2P03680_001
GSMUA_Achr3P14180_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	GSMUA_Achr2P03680_001	AT1G75010.1	19564892
AT3G19180.1	GSMUA_Achr1P15150_001	AT3G19180.1	19564892
AT3G19180.1	GSMUA_Achr3P14180_001	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14180_001	Banana	mitochondrion	70.46	69.87
HORVU6Hr1G028890.1	Barley	cytosol	6.78	62.92
HORVU7Hr1G022620.1	Barley	cytosol	6.66	61.8
HORVU5Hr1G017780.1	Barley	cytosol	6.66	61.8
HORVU4Hr1G064930.1	Barley	cytosol	6.54	60.67
HORVU5Hr1G052700.1	Barley	cytosol	6.3	59.77
HORVU5Hr1G052680.1	Barley	cytosol	6.3	59.77
HORVU6Hr1G023350.1	Barley	cytosol	6.42	59.55
HORVU1Hr1G043130.1	Barley	cytosol	6.42	59.55
HORVU2Hr1G119920.8	Barley	cytosol	49.39	56.28
EES13095	Sorghum	plastid	50.61	52.38
Zm00001d001844_P001	Maize	plastid	50.36	52.0
VIT_17s0053g00090.t01	Wine grape	plastid	51.69	51.82
TraesCS2A01G555400.1	Wheat	plastid	50.73	51.54
TraesCS2D01G559100.1	Wheat	plastid	50.61	51.35
PGSC0003DMT400026299	Potato	cytosol	50.97	50.72
Solyc03g098610.2.1	Tomato	cytosol	50.73	50.48
TraesCS2B01G588400.1	Wheat	plastid	50.12	50.43
KRH09390	Soybean	plasma membrane, plastid	47.09	47.91
Bra022392.1-P	Field mustard	plasma membrane, plastid	46.61	47.71
CDX92306	Canola	plasma membrane	46.37	47.58
KRH38887	Soybean	plastid	46.73	47.54
AT3G19180.1	Thale cress	plastid	47.09	47.5
CDX99260	Canola	plastid	46.0	47.2
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	19.85	18.7
Os04t0675700-00	Rice	cytosol	2.78	17.69

Protein Annotations

EnsemblPlants:GSMUA_Achr1P15150_001	EnsemblPlants:GSMUA_Achr1T15150_001	EnsemblPlantsGene:GSMUA_Achr1G15150_001	InterPro:DUF4101	ncoils:Coil	PANTHER:PTHR33925
PANTHER:PTHR33925:SF2	PFAM:PF13355	SEG:seg	UniParc:UPI000296F169	UniProt:M0S023	MapMan:13.6.1.2.6

Description

OsFBX154 - F-box domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G15150_001]

Coordinates

chr1:-:11417540..11426239

Molecular Weight (calculated)

91306.2 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.134

Length

826 amino acids

Sequence
(BLAST)

001: MALSHTVFGL PLRCGSVGNA TFEERRRSLA LTGVASLACG RERRVLSEPS PEAKSRTSRM EISGQAKMKV LEAPAIENGQ VRDTVEIPVT CFQLLGVTVQ
101: AEKDEIVKAV MELKNSTIED GYTAETIVSR KDLLMDVRDK LLFEPEYAGN IKEKVPPKSS LRIPWSWLPV ALCLLQEVGE VKLVLEIGRA ALQLPDAKPY
201: SHDLLLSMAL AECSIAKVGF EKNKVSEGFE ALARAQYLLK SNVSLAKMPL LSQVEESLED LAPACTLELL GLPLIPDSAE RRRGALAALQ ELIRQGLDVE
301: SSCRVQDWPS FLIQAMNRLM ATEIVDLLSW DTLAVTRKNK KSIESQSQRV VLDLNCFYLA MVAHIALGFS MRQNEMITRA KAICECLIIS DGADLKFEEA
401: FCSFLLGQTG GMETVEKLLQ LETIRSCTSQ NSRSGMSGTY KDKGTVNQTL ETWLKDAVLS LFPDTRDCSP SLANFFGSPK RILSSGNQKK IGTMKTLPSA
501: GHYVSSFGLL VDHRTSGAQS AKVNSTNNLG EAVKQLAPVN LQSQIAVGKT NGNASLLSSQ LKRNLDLHHQ GFWESWLNKG DITGKVAYMT LAGCILFGAF
601: KLLAMQFGHL KMPHELKSIN HCITSEAAAL SHFAGGDSTS AFRGRDIMWQ LRKLWSMFSQ RLEHKISVGS MQNGWPTDLS PLSTSAGFMI HKRHMALEEA
701: EALVHQWQDI KAEALGPSHQ IQLLSNILSE AMLSKWQDLA NSAKAKSCFW RFVLIQAAIL RAEIVSDGGD DEFAEIEAVI EEAAELVDES EPKKPSYYST
801: YKVHYILRRQ EDGSWRICRG DIQNQT

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.