Factsheet for VIT_17s0053g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02140.t01
VIT_17s0053g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	VIT_01s0010g02140.t01	AT1G75010.1	19564892
AT3G19180.1	VIT_17s0053g00090.t01	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098610.2.1	Tomato	cytosol	60.44	60.0
PGSC0003DMT400026299	Potato	cytosol	60.32	59.88
Bra022392.1-P	Field mustard	plasma membrane, plastid	55.34	56.51
AT3G19180.1	Thale cress	plastid	55.83	56.17
CDX99260	Canola	plastid	54.61	55.9
KRH38887	Soybean	plastid	54.98	55.79
CDX92306	Canola	plasma membrane	54.49	55.78
KRH09390	Soybean	plasma membrane, plastid	54.37	55.17
HORVU6Hr1G028890.1	Barley	cytosol	5.95	55.06
HORVU5Hr1G017780.1	Barley	cytosol	5.83	53.93
HORVU7Hr1G022620.1	Barley	cytosol	5.83	53.93
HORVU2Hr1G119920.8	Barley	cytosol	46.6	52.97
HORVU1Hr1G043130.1	Barley	cytosol	5.7	52.81
HORVU4Hr1G064930.1	Barley	cytosol	5.7	52.81
HORVU5Hr1G052680.1	Barley	cytosol	5.46	51.72
HORVU5Hr1G052700.1	Barley	cytosol	5.46	51.72
GSMUA_Achr1P15150_001	Banana	plastid	51.82	51.69
HORVU6Hr1G023350.1	Barley	cytosol	5.58	51.69
EES13095	Sorghum	plastid	48.79	50.38
Zm00001d001844_P001	Maize	plastid	48.06	49.5
TraesCS2D01G559100.1	Wheat	plastid	48.54	49.14
TraesCS2A01G555400.1	Wheat	plastid	48.3	48.95
TraesCS2B01G588400.1	Wheat	plastid	48.66	48.84
GSMUA_Achr3P14180_001	Banana	mitochondrion	48.18	47.66
VIT_02s0033g00060.t01	Wine grape	mitochondrion	21.24	21.96
Os04t0675700-00	Rice	cytosol	2.91	18.46

Protein Annotations

EntrezGene:100263251	wikigene:100263251	MapMan:13.6.1.2.6	ProteinID:CCB58776	ProteinID:CCB58776.1	InterPro:DUF4101
UniProt:F6HVR3	EMBL:FN596258	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009528
GO:GO:0009536	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0043572
GO:GO:0043621	EntrezGene:LOC100263251	wikigene:LOC100263251	PFAM:PF13355	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2
UniParc:UPI0002109F38	ArrayExpress:VIT_17s0053g00090	EnsemblPlantsGene:VIT_17s0053g00090	EnsemblPlants:VIT_17s0053g00090.t01	RefSeq:XP_002269313	RefSeq:XP_002269313.1
RefSeq:XP_002269313.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:14509258..14517807

Molecular Weight (calculated)

90830.6 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.157

Length

824 amino acids

Sequence
(BLAST)

001: MSMASSSGCI VLVGTTSAVE SSSAGFGGCS SPVVLQFDVA LGGSNGGGLS RVCRVRIGVR SGRRWRSRAI RELHQQKNQI HGGPGNAAPT TTVEIPVSCY
101: QIVGVPDQAE KDEIVKSVMV LKNAEVEEGY TMETVMSRQD LLMDVRDKLL FEPEYAGNVK EKIPPKSALR IPWAWLPGAL CLLQEVGEEK LVLDIGRRAL
201: QHPDAKPYIH DLILSMALAE CAIAKIGFEK NKVSYGFEAL ARAQCLLRSK MSLGKMALLS QIEESLEELA PACTLELLGM PYIPENTERR RGAIAALCEL
301: LRQGLDVETS CQVQDWPCFL SRALNRLMVM EIIDLLPWDN LAVTRKNKKS LESQNQRVVI DFNCFYMVLI AHIALGFSSK QADLINKAKV ICECLIASDG
401: VDLKFEEAFC SFLLGQGDQA EAVERLRQLE SGSNTASRNS IPGKEIKDSS NANPSLELWL KEAVLSVFPD TRDCSPSLAS FFGAEKRTPR NRQTKGALLT
501: VPSVNHRPIS TALASDRRDI EEPLSYKNSS RHLGSAVKQL APADLQSPLI LGKNGNESDI NPPSVQLKRN LGAYHSKVWE NWLTTRDVVG RVTFVTVLGC
601: VVLMTFKLSG LKFGRMRTTS RLASHKSIVE TSSLARTTDP SLDCRSSITY KLKKLLVKVT KQLRNRSDGG NLQSSGLAAN LSSSMAAVDR SPMPMQEAEM
701: LVKQWQAAKA QALGPSHQID SLSEVLDDSM LVQWQALADA ARLKSCFWRF VLLQLSVIRA DILSDSTGIE MAEIEALLEE AAELVDESQP KNPNYYSTYK
801: VRYLLRRQDD GSWRFCEGDI QIPC

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.