Factsheet for PGSC0003DMT400026299

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026299

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	PGSC0003DMT400026299	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098610.2.1	Tomato	cytosol	96.27	96.27
VIT_17s0053g00090.t01	Wine grape	plastid	59.88	60.32
HORVU6Hr1G028890.1	Barley	cytosol	6.14	57.3
HORVU7Hr1G022620.1	Barley	cytosol	6.02	56.18
HORVU5Hr1G017780.1	Barley	cytosol	6.02	56.18
HORVU1Hr1G043130.1	Barley	cytosol	5.9	55.06
CDX92306	Canola	plasma membrane	52.53	54.16
HORVU5Hr1G052700.1	Barley	cytosol	5.66	54.02
HORVU5Hr1G052680.1	Barley	cytosol	5.66	54.02
HORVU6Hr1G023350.1	Barley	cytosol	5.78	53.93
HORVU4Hr1G064930.1	Barley	cytosol	5.78	53.93
Bra022392.1-P	Field mustard	plasma membrane, plastid	52.41	53.9
CDX99260	Canola	plastid	52.17	53.79
AT3G19180.1	Thale cress	plastid	53.01	53.72
KRH38887	Soybean	plastid	52.05	53.2
KRH09390	Soybean	plasma membrane, plastid	51.81	52.96
HORVU2Hr1G119920.8	Barley	cytosol	46.14	52.83
GSMUA_Achr1P15150_001	Banana	plastid	50.72	50.97
EES13095	Sorghum	plastid	48.07	50.0
Zm00001d001844_P001	Maize	plastid	47.23	49.0
TraesCS2D01G559100.1	Wheat	plastid	47.71	48.65
TraesCS2A01G555400.1	Wheat	plastid	47.47	48.46
TraesCS2B01G588400.1	Wheat	plastid	47.71	48.23
GSMUA_Achr3P14180_001	Banana	mitochondrion	47.83	47.66
PGSC0003DMT400009646	Potato	plastid	18.55	18.67
Os04t0675700-00	Rice	cytosol	2.77	17.69

Protein Annotations

EntrezGene:102599508	MapMan:13.6.1.2.6	ncoils:Coil	InterPro:DUF4101	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009507	GO:GO:0009528	GO:GO:0009536	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020
GO:GO:0016043	GO:GO:0043572	GO:GO:0043621	UniProt:M1AMZ8	PFAM:PF13355	EnsemblPlantsGene:PGSC0003DMG400010151
PGSC:PGSC0003DMG400010151	EnsemblPlants:PGSC0003DMT400026299	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2	UniParc:UPI000295F52B	RefSeq:XP_006353937.1
SEG:seg	:	:	:	:	:

Description

ARC6H [Source:PGSC_GENE;Acc:PGSC0003DMG400010151]

Coordinates

chr3:+:44504804..44513984

Molecular Weight (calculated)

93168.6 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.207

Length

830 amino acids

Sequence
(BLAST)

001: MTAIFYQVPS ALYFCSNEND LDKVFLYNAA LDVPIRGKND KKWGKFRARV TVGRCGSRKK VNRRWRLYAT DTRVLESGTV DRSSANSQLP TVPSIEIPVT
101: CYQIIGVSDR AEKDEIVKSV MHLKNAEIED GYTMDAVVSR QNLLMDVRDK LLFEPEYAGN IKERVPPRSS LRIPWAWLSS ALCLLQEVGE EKLVLNIGQK
201: ALQHPDSKPY VHDILLSMAL AECAIAKVGF EKNKISQGFE ALARAQCLLR SKVSLGKMTL LSQIEESLEE LAPACTLELL GLPRTPENAE RRLGAIAALR
301: ELLRQGLDVE ASCQVQDWQC FLNQALNKLM ASEIVELLQW DNLALTRKNK KSIESQNQRV VIDFNCFYVV LLAHIALGFS SKQIDLINKS KIICECLIAS
401: EGVDLKFEEA FLLFLLGQGD EAAATEKLRQ LELNSDTASR NLASVKETKD VSTVSKPLET WLKDAVLGLF PDTRDCSPSL VNFFRGEKRP FVSRGNKRGL
501: QTASHISHRP LAPAITRDQR ATDEPLLYGD TSRHLGSAVK QLAPPNLQAQ LTVDKVNVGN ASGMPSVQLK RNLGAGRKVW EIWLGLNSIV EKIIFVASVG
601: CVIFVSFKLM NMQLWRMKSG SGWWLNTPRM TSSHSWKMDF PQDPNYRQAS NRRSGIIQKL KKLLPKFTMQ IGEHPQASGL QNSFFAAGLL PTAAYKTPMP
701: IEEAETLIKK WQTIKAEALG PDHNIDGLFD VLDEPMLVQW QALSEAAKTR SCFWRFVLLQ LSVLRAEILT DGIGQEMAEI EAILEEAAEL VDESQLKNPN
801: YYSTYKIRYV LKRQDGGAWR FSEGDILTES

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.