Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G028890.1 | Barley | cytosol | 10.62 | 86.52 |
| TraesCS2D01G559100.1 | Wheat | plastid | 96.14 | 85.63 |
| TraesCS2A01G555400.1 | Wheat | plastid | 96.0 | 85.61 |
| TraesCS2B01G588400.1 | Wheat | plastid | 95.72 | 84.53 |
| HORVU7Hr1G022620.1 | Barley | cytosol | 10.34 | 84.27 |
| HORVU5Hr1G017780.1 | Barley | cytosol | 10.34 | 84.27 |
| HORVU6Hr1G023350.1 | Barley | cytosol | 10.34 | 84.27 |
| HORVU5Hr1G052680.1 | Barley | cytosol | 10.07 | 83.91 |
| HORVU5Hr1G052700.1 | Barley | cytosol | 10.07 | 83.91 |
| HORVU1Hr1G043130.1 | Barley | cytosol | 10.21 | 83.15 |
| HORVU4Hr1G064930.1 | Barley | cytosol | 10.07 | 82.02 |
| EES13095 | Sorghum | plastid | 80.0 | 72.68 |
| Zm00001d001844_P001 | Maize | plastid | 79.31 | 71.88 |
| GSMUA_Achr1P15150_001 | Banana | plastid | 56.28 | 49.39 |
| VIT_17s0053g00090.t01 | Wine grape | plastid | 52.97 | 46.6 |
| GSMUA_Achr3P14180_001 | Banana | mitochondrion | 53.38 | 46.46 |
| Solyc03g098610.2.1 | Tomato | cytosol | 52.97 | 46.27 |
| PGSC0003DMT400026299 | Potato | cytosol | 52.83 | 46.14 |
| AT3G19180.1 | Thale cress | plastid | 50.07 | 44.32 |
| Bra022392.1-P | Field mustard | plasma membrane, plastid | 49.24 | 44.24 |
| CDX99260 | Canola | plastid | 49.1 | 44.22 |
| CDX92306 | Canola | plasma membrane | 49.1 | 44.22 |
| KRH09390 | Soybean | plasma membrane, plastid | 48.41 | 43.23 |
| KRH38887 | Soybean | plastid | 48.0 | 42.86 |
| Os04t0675700-00 | Rice | cytosol | 3.72 | 20.77 |
| HORVU6Hr1G012020.11 | Barley | nucleus | 21.38 | 18.83 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G119920.8 | EnsemblPlantsGene:HORVU2Hr1G119920 | InterPro:DUF4101 | PANTHER:PTHR33925 | PANTHER:PTHR33925:SF2 | PFAM:PF13355 |
| SEG:seg | UniParc:UPI000B4874C0 | UniProt:A0A287JNG2 | MapMan:13.6.1.2.6 | : | : |
Description
No Description!
Coordinates
chrchr2H:-:746569202..746574176
Molecular Weight (calculated)
80008.0 Da
IEP (calculated)
5.352
GRAVY (calculated)
-0.308
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVQILGVT EKAEKDEIVK SAIDLRKSEI EDGYTEEVST CRQALLLDVR DKLLFEQEYA GSTRAKVPPR SSLHIPWSWL PAALCVLQEV GEEKLVLDIG
101: QAALRRPDSK PYAHDVLLAM ALAECSIAKA SFEKSKVSLG FEALARAQYL LRKKTSLEKM PLLEQIEESL EELAPACTLE VLSLPRTPEN SERRRGAIAA
201: LCELLGQGLD VESSCRVHDW PYFLGQAMDK LLATEIVELL SWDSLATTRK NKKSLESQSQ RVVVDFNCFY RAMLAHLASG FSTRQTELIS KAKTICECLV
301: ASENTDLKFE ESFCSFLLGE ESGTTVFEKL QQLQSNGSSN SRNYGLAKKK DSSDKVTVNQ SLELWLKDVA LSRFADTRDC PPSLANFFAA PKRLISTSKQ
401: KLGATRRVLL SSQTSSSAST SNRTSGQQNP RLNSTSHLGE AVKQLAPTTL GGQGHTSTDR PVNGLSTTSV PLKRNPGSHP VRTLESWGLT GDVIGKIAYT
501: AVLGFALFGT LKLLRFQFGS TKPVPSTRES AATSSLNEAS SSDGSLISSR VREQFEKLSK MLWLNNRLYL RSEGSDLSPG SGDVTAIARK ERMSLQEAEA
601: LVKQWQDIKS EALGPDYEID MLSDVLDGSM LSKWQDLALS AKDQSCYWRF VLLNLSVVRA EILLDEAGDG EVAEIDAVLE EAAELVDDSQ PKKPSYYSTY
701: EVQYTLRRQD DGSWKICEAA VRDLS
101: QAALRRPDSK PYAHDVLLAM ALAECSIAKA SFEKSKVSLG FEALARAQYL LRKKTSLEKM PLLEQIEESL EELAPACTLE VLSLPRTPEN SERRRGAIAA
201: LCELLGQGLD VESSCRVHDW PYFLGQAMDK LLATEIVELL SWDSLATTRK NKKSLESQSQ RVVVDFNCFY RAMLAHLASG FSTRQTELIS KAKTICECLV
301: ASENTDLKFE ESFCSFLLGE ESGTTVFEKL QQLQSNGSSN SRNYGLAKKK DSSDKVTVNQ SLELWLKDVA LSRFADTRDC PPSLANFFAA PKRLISTSKQ
401: KLGATRRVLL SSQTSSSAST SNRTSGQQNP RLNSTSHLGE AVKQLAPTTL GGQGHTSTDR PVNGLSTTSV PLKRNPGSHP VRTLESWGLT GDVIGKIAYT
501: AVLGFALFGT LKLLRFQFGS TKPVPSTRES AATSSLNEAS SSDGSLISSR VREQFEKLSK MLWLNNRLYL RSEGSDLSPG SGDVTAIARK ERMSLQEAEA
601: LVKQWQDIKS EALGPDYEID MLSDVLDGSM LSKWQDLALS AKDQSCYWRF VLLNLSVVRA EILLDEAGDG EVAEIDAVLE EAAELVDDSQ PKKPSYYSTY
701: EVQYTLRRQD DGSWKICEAA VRDLS
001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK
Arabidopsis Description
CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.