Factsheet for Bra022392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015875.1-P
Bra022392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19180.1	Bra015875.1-P	AT1G75010.1	19564892
AT3G19180.1	Bra022392.1-P	AT3G19180.1	19564892

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92306	Canola	plasma membrane	97.03	97.27
CDX99260	Canola	plastid	96.9	97.14
AT3G19180.1	Thale cress	plastid	80.55	79.37
VIT_17s0053g00090.t01	Wine grape	plastid	56.51	55.34
HORVU5Hr1G017780.1	Barley	cytosol	6.07	55.06
HORVU6Hr1G028890.1	Barley	cytosol	6.07	55.06
HORVU7Hr1G022620.1	Barley	cytosol	5.95	53.93
HORVU1Hr1G043130.1	Barley	cytosol	5.82	52.81
PGSC0003DMT400026299	Potato	cytosol	53.9	52.41
Solyc03g098610.2.1	Tomato	cytosol	53.28	51.81
HORVU5Hr1G052680.1	Barley	cytosol	5.58	51.72
HORVU5Hr1G052700.1	Barley	cytosol	5.58	51.72
HORVU4Hr1G064930.1	Barley	cytosol	5.7	51.69
HORVU6Hr1G023350.1	Barley	cytosol	5.7	51.69
KRH38887	Soybean	plastid	51.92	51.6
KRH09390	Soybean	plasma membrane, plastid	51.67	51.35
HORVU2Hr1G119920.8	Barley	cytosol	44.24	49.24
GSMUA_Achr1P15150_001	Banana	plastid	47.71	46.61
EES13095	Sorghum	plastid	45.97	46.49
TraesCS2B01G588400.1	Wheat	plastid	46.47	45.68
Zm00001d001844_P001	Maize	plastid	45.23	45.62
TraesCS2A01G555400.1	Wheat	plastid	45.85	45.51
TraesCS2D01G559100.1	Wheat	plastid	45.72	45.33
GSMUA_Achr3P14180_001	Banana	mitochondrion	44.11	42.74
Bra033637.1-P	Field mustard	mitochondrion, plastid	19.21	19.8
Os04t0675700-00	Rice	cytosol	2.48	15.38

Protein Annotations

MapMan:13.6.1.2.6	EnsemblPlantsGene:Bra022392	EnsemblPlants:Bra022392.1	EnsemblPlants:Bra022392.1-P	ncoils:Coil	InterPro:DUF4101
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009528	GO:GO:0009536	GO:GO:0009987
GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0043572	GO:GO:0043621	UniProt:M4E0U5
PFAM:PF13355	PANTHER:PTHR33925	PANTHER:PTHR33925:SF2	UniParc:UPI0002547F72	SEG:seg	:

Description

AT3G19180 (E=0.0) ARC6H, PARC6 | ARC6H

Coordinates

chrA05:-:17993319..17997651

Molecular Weight (calculated)

89191.9 Da

IEP (calculated)

7.185

GRAVY (calculated)

-0.223

Length

807 amino acids

Sequence
(BLAST)

001: MPVLYTFPVL PSSSLLRGIS NRGTSIILHP PEVQISCFLV ARSDPGEFDG FSCSSRRRRL NAGGGGGAHV VDNAPSRTSS LAASTSTIEI PVTCYQLIGV
101: SEKAEKDEVV KSVLNLKKAD AEEGYTMEAA AARQDLLMDV RDKLLFEPEY AGNLKENISP KSPLRIPWAW LPAALCLLQE VGEEKLVLDI GRSVLRHLDS
201: KPYIHDIFLS MALAECAVAK DAFEANKVSQ GFEALARAQS FLKSKVTLGK LALLSQIEES LEELAAPCTL DLLGLPPLPE NAERRRGAVA ALRELLRQGL
301: DVEASCQIQD WPCFLSQAIS RLLATEIVDL LPWDTLAITR KNKKSLESHN QRVVIDFNCF YMVLVAHIAV GFSVKQTDKI NKAKSICECL IASEGVDLKF
401: EEAFCSFLLN QGSEAEALEK LKQLDSNSDS AVRNSILGKE LRTTSATPSL EAWLKDSVLA NFPDTRGCSP SLANFFRAEK KYPENKKMGS PPIINHKTNQ
501: RPISSMQFMN SSQHLYTAVE QLAPTNLQSP VASTKNIDES GASRPSVQLK RNLGLQQNKI WNGWLSQSSL IQRVSVAALL GCTVFFSLKL TGIRSGRLQS
601: LPTWGSAKPH LESDSGNFRR NLASVNRKGV VGNIKTLLDM LKRHHGEHSD ALYLKSSGLS ATLSHPTSEV HKRPMLTEDA EELVRQWENI KAEALGPTHQ
701: VYSLPEVLDE AMLIQWQTLA QTAKAKSCYW RFVLLNLEIL QAHISTDGSV AGETAEIEAL LEEAAELVDE SQPKNAKYYS TYKIRYTLKK QEDGSWRFCQ
801: SDIQIQK

Best Arabidopsis Sequence Match ( AT3G19180.1 )
(BLAST)

001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQWQ TLAQTAEAKS CYWRFVLLHL EVLQAHIFED GIAGEAAEIE ALLEEAAELV DESQPKNAKY YSTYKIRYIL
801: KKQEDGLWKF CQSDIQIQK

Arabidopsis Description

CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.