Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G052680.1 | Barley | cytosol | 100.0 | 100.0 |
| HORVU6Hr1G028890.1 | Barley | cytosol | 97.7 | 95.51 |
| HORVU7Hr1G022620.1 | Barley | cytosol | 95.4 | 93.26 |
| HORVU1Hr1G043130.1 | Barley | cytosol | 95.4 | 93.26 |
| HORVU5Hr1G017780.1 | Barley | cytosol | 95.4 | 93.26 |
| HORVU6Hr1G023350.1 | Barley | cytosol | 94.25 | 92.13 |
| HORVU4Hr1G064930.1 | Barley | cytosol | 93.1 | 91.01 |
| HORVU2Hr1G119920.8 | Barley | cytosol | 83.91 | 10.07 |
| TraesCS2A01G555400.1 | Wheat | plastid | 87.36 | 9.35 |
| TraesCS2B01G588400.1 | Wheat | plastid | 86.21 | 9.14 |
| TraesCS2D01G559100.1 | Wheat | plastid | 85.06 | 9.09 |
| EES13095 | Sorghum | plastid | 71.26 | 7.77 |
| Zm00001d001844_P001 | Maize | plastid | 71.26 | 7.75 |
| GSMUA_Achr1P15150_001 | Banana | plastid | 59.77 | 6.3 |
| GSMUA_Achr3P14180_001 | Banana | mitochondrion | 57.47 | 6.0 |
| KRH09390 | Soybean | plasma membrane, plastid | 54.02 | 5.79 |
| KRH38887 | Soybean | plastid | 54.02 | 5.79 |
| PGSC0003DMT400026299 | Potato | cytosol | 54.02 | 5.66 |
| Solyc03g098610.2.1 | Tomato | cytosol | 54.02 | 5.66 |
| CDX99260 | Canola | plastid | 51.72 | 5.59 |
| CDX92306 | Canola | plasma membrane | 51.72 | 5.59 |
| Bra022392.1-P | Field mustard | plasma membrane, plastid | 51.72 | 5.58 |
| AT3G19180.1 | Thale cress | plastid | 51.72 | 5.49 |
| VIT_17s0053g00090.t01 | Wine grape | plastid | 51.72 | 5.46 |
| Os04t0675700-00 | Rice | cytosol | 4.6 | 3.08 |
| HORVU6Hr1G012020.11 | Barley | nucleus | 20.69 | 2.19 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G052700.1 | EnsemblPlantsGene:HORVU5Hr1G052700 | PANTHER:PTHR33925 | PANTHER:PTHR33925:SF2 | UniParc:UPI000B4619CF | UniProt:A0A287R8D3 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:412919734..412920108
Molecular Weight (calculated)
10078.2 Da
IEP (calculated)
8.895
GRAVY (calculated)
-0.491
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: RRTRRCVSVT EKAEKDKIFK SSIELRKSEI EDGYTEEVST CRHALLLDMR DKLLFEQEYA GSTRAKVPPR SSLHIPWSWL PAALCVL
001: MPVAYTFPVL PSSCLLCGIS NRSTSFVVDR PELQISGLLV VRSESGEFFG SGLSLRRFQR EGRRRLNAAG GGIHVVDNAP SRTSSLAAST STIELPVTCY
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQVT VSIHLLLFLY LIMLVYYS
101: QLIGVSEQAE KDEVVKSVIN LKKTDAEEGY TMEAAAARQD LLMDVRDKLL FESEYAGNLK EKIAPKSPLR IPWAWLPGAL CLLQEVGQEK LVLDIGRAAL
201: RNLDSKPYIH DIFLSMALAE CAIAKAAFEV NKVSQGFEAL ARAQSFLKSK VTLGKLALLT QIEESLEELA PPCTLDLLGL PRTPENAERR RGAIAALREL
301: LRQGLSVEAS CQIQDWPCFL SQAISRLLAT EIVDLLPWDD LAITRKNKKS LESHNQRVVI DFNCFYMVLL GHIAVGFSGK QNETINKAKT ICECLIASEG
401: VDLKFEEAFC SFLLKQGSEA EALEKLKQLE SNSDSAVRNS ILGKESRSTS ATPSLEAWLM ESVLANFPDT RGCSPSLANF FRAEKKYPEN KKMGSPSIMN
501: HKTNQRPLST TQFVNSSQHL YTAVEQLTPT DLQSPVVSAK NNDETSASMP SVQLKRNLGV HKNKIWDEWL SQSSLIGRVS VVALLGCTVF FSLKLSGIRS
601: GRLQSMPISV SARPHSESDS FLWKTESGNF RKNLDSVNRN GIVGNIKVLI DMLKMHCGEH PDALYLKSSG QSATSLSHSA SELHKRPMDT EEAEELVRQW
701: ENVKAEALGP THQVYSLSEV LDESMLVQVT VSIHLLLFLY LIMLVYYS
Arabidopsis Description
CDP1Plastid division protein CDP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VY16]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.