Factsheet for VIT_01s0010g02140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02140.t01
VIT_02s0033g00060.t01
VIT_16s0050g01070.t01
VIT_17s0053g00090.t01
VIT_19s0090g01320.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75010.1	VIT_01s0010g02140.t01	AT1G75010.1	17304239
AT1G75010.1	VIT_17s0053g00090.t01	AT3G19180.1	19564892
AT1G75010.1	VIT_16s0050g01070.t01	AT5G24020.1	17304239
AT1G75010.1	VIT_02s0033g00060.t01	AT5G42480.1	19453460
AT1G75010.1	VIT_19s0090g01320.t01	AT5G55280.1	17304239

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36043	Soybean	plastid	54.17	48.71
Solyc01g007880.2.1	Tomato	plastid	50.72	45.2
AT1G75010.1	Thale cress	plastid	46.55	43.72
Bra015875.1-P	Field mustard	plastid	45.69	43.03
CDY64472	Canola	endoplasmic reticulum, extracellular	46.55	41.7
CDX73132	Canola	plastid	45.98	41.67
Os09t0555600-01	Rice	plastid	40.23	37.84
TraesCS5D01G365000.1	Wheat	plastid	38.22	36.34
TraesCS5B01G358700.1	Wheat	plastid	38.22	36.24
TraesCS5A01G356200.1	Wheat	plastid	38.07	36.1
Zm00001d021407_P001	Maize	plastid	38.22	35.23
HORVU5Hr1G088120.2	Barley	plastid	38.94	34.13
OQU89910	Sorghum	plastid	37.5	33.76
GSMUA_Achr2P03680_001	Banana	nucleus	45.11	27.69

Protein Annotations

EntrezGene:100264763	wikigene:100264763	MapMan:13.6.1.2.4	Gene3D:2.20.110.10	Gene3D:3.40.50.1440	EMBL:AM445252
ProteinID:CAN65183	ProteinID:CAN65183.1	ProteinID:CBI27516	ProteinID:CBI27516.3	UniProt:D7TAJ3	EMBL:FN595754
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009570	GO:GO:0009707	GO:GO:0009987
GO:GO:0010020	GO:GO:0015074	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0035452
GO:GO:0043621	InterPro:IPR036525	EntrezGene:LOC100264763	wikigene:LOC100264763	InterPro:MORN	PFAM:PF02493
PRINTS:PR00423	PANTHER:PTHR23084	PANTHER:PTHR23084:SF205	SMART:SM00698	SUPFAM:SSF52490	SUPFAM:SSF82185
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001BE2AAD	ArrayExpress:VIT_01s0010g02140	EnsemblPlantsGene:VIT_01s0010g02140	EnsemblPlants:VIT_01s0010g02140.t01
RefSeq:XP_002267944	RefSeq:XP_002267944.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:19097142..19129534

Molecular Weight (calculated)

77151.0 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.277

Length

696 amino acids

Sequence
(BLAST)

001: MGIIANLLCL ISHQTRNIFR RDSLKVHLQQ RSIGRDITPV LVETFLSAQQ HLKTIVLVAS AGYGSDHITA IDILRTTRSA NGLAIGVILK PFSFEGKRRQ
101: NEVKNLVERL QEHTNFCIVI DTDTLLKKDL VTLDEALKTA DNGVLLAINA ISVLISGMHK KLIDAPHDNM KELKGPEIIK ILESHKEAKI GFGAGYNIET
201: SILQAIYDCP FLSVCLKDLN GTVICILASS VIINNSDVLS FLHVFRKTTE CTREIIISII HEPNLEPNLI VTTVIILGST GQPASQKSSI LSQLAQHFPF
301: IFNLLGGHHL QPNGTQESPS IEGPGLPKLI NAHDSGEMQT GIPMDGIADD MDMYSEELQM LLGRNDHEIN ASRDSNGRYE QSELGCSEAT IDSLNFNDQN
401: TEGISAFQRE PLIGWNLGPG DQIAQEWAKE RAADSGATTT LDNLSIFHLP VGVRPLEELN DSPNISNTTQ HPETKIGDEI KAQPLVTSRM PWDELTGAGF
501: EAVMDLYNSA STVLKGKYAD IPKKQGMLSV RAASMLESER DSQKKWSPIV QMQYRGGIYQ GRCQGGLPEG KGRLSLRDGS IYDGMWRYGK RSGPGTLYFC
601: NGDVFQGSWR DDVMHGKGWF YFHSGDRWFA NFWKGKANGE GRFYSKFGDV FFGHFKDGWR HGHFLCINVN GERCVEVWDE GVLVSREQLD SDTGTG

Best Arabidopsis Sequence Match ( AT1G75010.1 )
(BLAST)

001: MPISMELPVF STLRVPLFSR LALLPTFGVP FSSLGATTRL NCTSRKARRI CVMCLVRDSA PIETCERAGE DGSDEFIEVL VIGSRKESIM DSCLDSPFPS
101: LPLRFWSISK DSSGGLVLQQ RLNHQDNALK TMNPIELLQS RPRAFILVAS AGYGSDQVEA INILSAVRSG GNLAVAVLLK PFSFEGRKRL EEVNELARKL
201: QQHTNFCIDI DIEVLLQKDL VTLDEALRNA NNAVSMAINA ASALISGMHG NFIDVMHKDL KELEGSEVKT ILESYKEAKV GFGVGHNLKT SILRAIYDCP
301: FFRPGLKDLN AIICIVASSV PLQKKDVKTI LRTFRQTMEY TGDIIVSTVH EPDLEPKVRV TTFFILSSSE VETSNKGNIF SGLVPFVLNI FTRYRSQLQK
401: ETNIGLGETP VSIKDSADST DVKTSNQNIE EFEIDSEDLL EVSENGDDSE YPLKEGEPSR NSRLDLKDEN VEDFGAIQRE PIANWSMDQG YQIEQKWQAD
501: SGDTAVLSLG IVNLPVGVRP SKKLNSNLSV ASQLSRKADS REESFFNPNG STKDSSDTAS TLLSEKYADF TKQRNLSARA SSMLEAERDS SKRWSPILEM
601: QYRGGLFKGR CQGGLPEGKG RLVLGDGSIY DGMWHNGKRS GLGTFYFKNG DVFQGTWRED LIHGKGWFYF HKGDRWFANF WKGKASGEGR FYSKSGEIFF
701: GHFKDGWRHG QFLCIDLDGT RYSETWDDGV LIDRKQVDAG D

Arabidopsis Description

ARC3Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6F6B5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.