Factsheet for GSMUA_Achr1P07790_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P07790_001
GSMUA_Achr2P03680_001
GSMUA_Achr7P06230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	GSMUA_Achr2P03680_001	AT1G75010.1	19453460
AT5G42480.1	GSMUA_Achr1P07790_001	AT5G42480.1	16146521
AT5G42480.1	GSMUA_Achr7P06230_001	AT5G55280.1	16146521
AT5G42480.1	GSMUA_Achr7P06230_001	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00060.t01	Wine grape	mitochondrion	54.28	59.72
Os02t0122400-01	Rice	plastid	48.8	55.66
Solyc04g081070.2.1	Tomato	plastid	51.88	55.56
EES06197	Sorghum	plastid	48.0	55.25
PGSC0003DMT400009646	Potato	plastid	51.43	54.67
KRH17386	Soybean	plastid	49.37	54.53
CDY61131	Canola	plastid	48.46	54.35
TraesCSU01G117700.1	Wheat	plastid	46.98	53.65
TraesCS6A01G066200.3	Wheat	plastid	47.21	53.63
Bra033637.1-P	Field mustard	mitochondrion, plastid	47.78	53.51
CDY22390	Canola	mitochondrion, plastid	47.78	53.51
KRH05905	Soybean	plastid	49.03	53.48
TraesCS6B01G089500.2	Wheat	plastid	46.18	53.01
AT5G42480.1	Thale cress	plastid	47.89	52.43
HORVU6Hr1G012020.11	Barley	nucleus	47.89	51.03
Zm00001d053923_P003	Maize	plastid	46.41	40.7
GSMUA_Achr1P15150_001	Banana	plastid	18.7	19.85
GSMUA_Achr3P14180_001	Banana	mitochondrion	17.56	18.49

Protein Annotations

MapMan:13.6.1.2.5	InterPro:DUF4101	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0010020	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031357	GO:GO:0043621	EnsemblPlantsGene:GSMUA_Achr1G07790_001	EnsemblPlants:GSMUA_Achr1P07790_001
EnsemblPlants:GSMUA_Achr1T07790_001	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M0RXY7	PFAM:PF13355	PANTHER:PTHR33925
PANTHER:PTHR33925:SF3	SUPFAM:SSF46565	TMHMM:TMhelix	UniParc:UPI000294BCF9	SEG:seg	:

Description

division protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G07790_001]

Coordinates

chr1:-:6004945..6010642

Molecular Weight (calculated)

98466.8 Da

IEP (calculated)

5.058

GRAVY (calculated)

-0.113

Length

877 amino acids

Sequence
(BLAST)

001: MSLLIFIIIL YIYYIYIYIY IYIYIYIYIY IYIYIYIYIY SKNPLLKKNK TKISRFKQTA TISPPQAARL CVTPPLLLPS YGDSQLLWRR VPPPPAAPLS
101: QKPLLFLLLQ VGALPPLQEH RRLPLEQMGG PPSRRLPLPH RHSHREPFCS LSRPPLLALL PPLPFPPPPA PPLPIDFYQV LGAETHLLGD GIRRAFEARV
201: SKPPQYGYSQ DALVGRRQIL QAAFDTLFDP SSREDYNRSI VEDPDSTITT YVPWDKVPGA LCVLQEAGET ELVLQVGKSL LLERLPKAFK QDVVLAMVLA
301: YVDLSRDVMA LNPPDFVSCC EVLERALKLL QEEGASNLAP HLLAQIDETL EEITPRCVLE LLALPLDSDH RIKREEGLHG VRNILWAVGR GGATAIGGGF
401: TRESFMNQTY IRMTAAEQVD LFAARPSDVP AEDFEVYGFA LALVAQAFVG KRPQLIRTAD NLFQQLQQTI LTPLGTFSEY AAKADCEIPF ALERGLCSLL
501: LGDVDECRMW LGIESDNSPY RDPEIVEFVM DNSNIDKDND VLPGLCKLLE TWLSEVVFPR FRDTRDIYFK LGDYYDDPMV LKYLERMEGD HGSPLAAAAA
601: IVKIGAEEAT AALGSVKSSV LQALQKVFPL TNKEERLSSE AYRDGTDIVP DLHMQETVIK IDQDKSGSHV EVSKKSDPED SYEQDLTNEI KIAVMKIMSA
701: GMVVGVLTMI GIKCLPGRNS LLVTGKETGS ATAANFTNID ENFVEEIPKM DARFAETLVH KWQNVKSRAL GPDHSLAELP EVLDGRMLKI WTDRAVEIAK
801: HGWFWEYTLL GLTIDSVTLS VDGRRAMVEA RIEEAARLTD DTHPEHNDSY STTYSTRYEM VHSKSGWKIT EGSVLQS

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.