CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98668
KRH05905
KRH14302
KRH17386
KRH36043
KRH46262
KRH73828

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42480.1	KRH36043	AT1G75010.1	19453460
AT5G42480.1	KRH05905	AT5G42480.1	16146521
AT5G42480.1	KRH17386	AT5G42480.1	16146521
AT5G42480.1	KRG98668	AT5G55280.1	16146521
AT5G42480.1	KRH14302	AT5G55280.1	16146521
AT5G42480.1	KRH46262	AT5G55280.1	16146521
AT5G42480.1	KRH73828	AT5G55280.1	16146521
AT5G42480.1	KRG98668	AT5G55280.1	19453460
AT5G42480.1	KRH14302	AT5G55280.1	19453460
AT5G42480.1	KRH46262	AT5G55280.1	19453460
AT5G42480.1	KRH73828	AT5G55280.1	19453460

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05905	Soybean	plastid	92.82	91.67
VIT_02s0033g00060.t01	Wine grape	mitochondrion	65.74	65.5
Solyc04g081070.2.1	Tomato	plastid	62.97	61.05
PGSC0003DMT400009646	Potato	plastid	62.59	60.24
Bra033637.1-P	Field mustard	mitochondrion, plastid	55.67	56.45
CDY22390	Canola	mitochondrion, plastid	55.67	56.45
AT5G42480.1	Thale cress	plastid	56.8	56.3
CDY61131	Canola	plastid	54.91	55.75
Os02t0122400-01	Rice	plastid	49.62	51.24
EES06197	Sorghum	plastid	49.12	51.18
TraesCSU01G117700.1	Wheat	plastid	49.24	50.91
TraesCS6B01G089500.2	Wheat	plastid	48.61	50.52
TraesCS6A01G066200.3	Wheat	plastid	48.99	50.39
GSMUA_Achr1P07790_001	Banana	endoplasmic reticulum, plasma membrane	54.53	49.37
HORVU6Hr1G012020.11	Barley	nucleus	49.62	47.87
Zm00001d053923_P003	Maize	plastid	47.73	37.9
KRH38887	Soybean	plastid	20.91	20.44
KRH09390	Soybean	plasma membrane, plastid	20.78	20.32

Protein Annotations

EMBL:ACUP02009086	EnsemblPlants:KRH17386	EnsemblPlantsGene:GLYMA_14G216700	EntrezGene:100790455	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF4101	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR33925	PANTHER:PTHR33925:SF3
PFAM:PF13355	ProteinID:KRH17386	ProteinID:KRH17386.1	SEG:seg	SUPFAM:SSF46565	UniParc:UPI000233BB33
UniProt:I1MC65	MapMan:13.6.1.2.5	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:48153661..48158020

Molecular Weight (calculated)

87152.9 Da

IEP (calculated)

4.627

GRAVY (calculated)

-0.155

Length

794 amino acids

Sequence
(BLAST)

001: METVVSRAVL VLCTPHPTTT HPFTKPNKLL RSSLSRGAAS LSATSKWAER LIADFQFLGD AAASTSTSTL SPSSVPPRLD PPERYVSIPL DLYRILGAEP
101: HFLGDGIRRA YEAKFSKPPQ YAFSNDALIS RRQILQAACE TLADPTSRRE YNQSLVDDEE AAILTQIPFD KVPGALCVLQ EAGETELVLE IGQGLLRERL
201: PKTFKQDVVL AMALAFVDVS RDAMALSPPD FIAACEMLER ALKLLQEEGA TSLAPDLQAQ IDETLEEITP RCVLELLALP LDDEHRARRE EGLLGVRNIL
301: WAVGGGGAAA IAGGFTREDF MNEAFLHMTA AEQVELFVAT PSTIPAESFE AYGVALALVA QAFVGKKPHL IQDADNLFQQ LQQTKITTVR NAPSVYIPKE
401: KREIDFALER GLCALLVGEL DQCRSWLGLD TDSSPYRNPS IIEFIMENAK GDEDSDLPGL CKLLETWLME VVFPRFRDTK ETRFKLGDYY DDPTVLRYLE
501: RLEGGSNSPL AAAAAIAKIG AEATAVISQV QASVINALKK AFPVGSEDQI VKHQVNGVNE DFGFSESENP LILSDQDSPV NAEVSGIKNT METRKGEFIT
601: EEIKHASVQI MCAGVVIGLV TLVGLKFLPT RNGSPILRKM TGSAMVSDTI NLGSLGDEEK VEQLPKMDAR VAEALVRKWQ SVKSEAFGPD HCLGRLHEVL
701: DGEMLKIWTD RAAEIAERGW SYDYTLEDLN IDSVTISQNG RRAVVETTLK ESTHLNAVGH PQHDASNSRT YTTRYEMSFT GAEWKIVEGA VLES

Best Arabidopsis Sequence Match ( AT5G42480.1 )
(BLAST)

001: MEALSHVGIG LSPFQLCRLP PATTKLRRSH NTSTTICSAS KWADRLLSDF NFTSDSSSSS FATATTTATL VSPPPSIDRP ERHVPIPIDF YQVLGAQTHF
101: LTDGIRRAFE ARVSKPPQFG FSDDALISRR QILQAACETL SNPRSRREYN EGLLDDEEAT VITDVPWDKV PGALCVLQEG GETEIVLRVG EALLKERLPK
201: SFKQDVVLVM ALAFLDVSRD AMALDPPDFI TGYEFVEEAL KLLQEEGASS LAPDLRAQID ETLEEITPRY VLELLGLPLG DDYAAKRLNG LSGVRNILWS
301: VGGGGASALV GGLTREKFMN EAFLRMTAAE QVDLFVATPS NIPAESFEVY EVALALVAQA FIGKKPHLLQ DADKQFQQLQ QAKVMAMEIP AMLYDTRNNW
401: EIDFGLERGL CALLIGKVDE CRMWLGLDSE DSQYRNPAIV EFVLENSNRD DNDDLPGLCK LLETWLAGVV FPRFRDTKDK KFKLGDYYDD PMVLSYLERV
501: EVVQGSPLAA AAAMARIGAE HVKASAMQAL QKVFPSRYTD RNSAEPKDVQ ETVFSVDPVG NNVGRDGEPG VFIAEAVRPS ENFETNDYAI RAGVSESSVD
601: ETTVEMSVAD MLKEASVKIL AAGVAIGLIS LFSQKYFLKS SSSFQRKDMV SSMESDVATI GSVRADDSEA LPRMDARTAE NIVSKWQKIK SLAFGPDHRI
701: EMLPEVLDGR MLKIWTDRAA ETAQLGLVYD YTLLKLSVDS VTVSADGTRA LVEATLEESA CLSDLVHPEN NATDVRTYTT RYEVFWSKSG WKITEGSVLA
801: S

Arabidopsis Description

ARC6Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.