CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87699
EES17047
OQU89910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	EES17047	AT1G69390.1	16014621
AT5G24020.1	EES17047	AT1G69390.1	16146521
AT5G24020.1	OQU89910	AT1G75010.1	17304239
AT5G24020.1	EER87699	AT5G24020.1	16014621
AT5G24020.1	EER87699	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035898_P001	Maize	plastid	94.23	93.33
Os06t0106000-01	Rice	plastid	90.71	92.48
TraesCS7D01G014700.1	Wheat	plastid	89.42	89.42
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	88.46	88.75
TraesCS4A01G474300.1	Wheat	plastid	88.46	88.18
HORVU7Hr1G001800.1	Barley	plastid	87.82	81.31
Bra009723.1-P	Field mustard	cytosol	41.03	73.56
GSMUA_Achr9P23510_001	Banana	plastid	62.5	66.78
KRH08863	Soybean	plastid	66.99	64.51
AT5G24020.1	Thale cress	plastid	66.67	63.8
CDX80403	Canola	plastid	66.99	63.72
CDX88064	Canola	plastid	66.67	63.61
VIT_16s0050g01070.t01	Wine grape	plastid	66.99	62.76
Solyc03g007980.1.1	Tomato	plastid	65.06	61.33
PGSC0003DMT400026256	Potato	plastid	65.06	61.14
CDY11108	Canola	mitochondrion	15.06	60.26
KRH48126	Soybean	extracellular	35.26	58.51
KRH38382	Soybean	cytosol	66.67	54.74
KRG89709	Soybean	plastid	16.03	34.97

Protein Annotations

MapMan:13.6.1.2.1	Gene3D:3.40.50.300	EntrezGene:8066872	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	EMBL:DQ118108	EnsemblPlants:EER87699
ProteinID:EER87699	ProteinID:EER87699.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987
GO:GO:0010020	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887	GO:GO:0030899	GO:GO:0042802
GO:GO:0042803	InterPro:MinD	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PFAM:PF01656	PIRSF:PIRSF003092
PANTHER:PTHR43384	PANTHER:PTHR43384:SF6	UniProt:Q45RR7	EnsemblPlantsGene:SORBI_3010G004400	SUPFAM:SSF52540	unigene:Sbi.13287
TIGRFAMs:TIGR01968	UniParc:UPI0000572441	RefSeq:XP_002436332.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:387676..390649

Molecular Weight (calculated)

32984.3 Da

IEP (calculated)

7.035

GRAVY (calculated)

0.145

Length

312 amino acids

Sequence
(BLAST)

001: MAFTPPRLLP LPLPPAAAPA STRAVSARHH GGRTAPELSG PTPRVVVVTS GKGGVGKTTT TANLAASLAR LGLPAVAVDA DAGLRNLDLL LGLENRVHLT
101: AADVLAGDCR LDQALVRHRA LQDLHLLCLS KPRSKLPLAF GSKTLTWVAD ALRRSPNTPA FILIDCPAGV DAGFVTAIAP AEEAVLVTTP DITALRDADR
201: VAGLLECDGI KDIKIIVNRV RPDLVKGEDM MSALDVQEML GLPLLGVVPE DAEVIRSTNR GVPLVLNDPP TPAGLALDQA TWRLVERDVM TAVMVEEQER
301: PKKKGGFFSF FG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.