CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87699
EES17047
OQU89910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	EES17047	AT1G69390.1	16146521
AT1G69390.1	OQU89910	AT1G75010.1	17304239
AT1G69390.1	EER87699	AT5G24020.1	16014621
AT1G69390.1	EER87699	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023760_P001	Maize	plastid	92.11	92.11
Os12t0498400-01	Rice	plastid	79.82	77.12
TraesCS5A01G107500.1	Wheat	plastid	78.51	75.85
TraesCS5B01G114800.1	Wheat	plastid	78.07	75.74
TraesCS5D01G117000.1	Wheat	plastid	77.63	75.0
HORVU5Hr1G035440.4	Barley	plastid	76.75	71.14
GSMUA_Achr3P18770_001	Banana	plastid	52.19	51.97
GSMUA_Achr10P...	Banana	plastid	51.75	51.53
KRH74964	Soybean	plastid	50.44	49.57
KRH70831	Soybean	plastid	49.56	48.71
Bra038308.1-P	Field mustard	cytosol	41.23	47.96
VIT_14s0108g01300.t01	Wine grape	plastid	48.68	47.64
CDY28547	Canola	plastid	45.18	46.4
CDY44064	Canola	plastid	44.74	46.15
PGSC0003DMT400072828	Potato	plastid	47.37	46.15
Solyc05g012710.2.1	Tomato	plastid	46.49	45.3
CDX95938	Canola	plastid	43.86	45.25
Bra004378.1-P	Field mustard	plastid	43.86	45.25
CDY40918	Canola	plastid	44.3	45.09
AT1G69390.1	Thale cress	plastid	44.3	44.1
CDY51505	Canola	cytosol	18.42	42.0

Protein Annotations

MapMan:13.6.1.2.3	EntrezGene:8063293	UniProt:C5YNV6	EnsemblPlants:EES17047	ProteinID:EES17047	ProteinID:EES17047.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0007049	GO:GO:0008150	GO:GO:0009536	GO:GO:0009706	GO:GO:0009987
GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0032955	GO:GO:0042802	GO:GO:0051117
GO:GO:0051301	InterPro:MinE	PFAM:PF03776	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8	EnsemblPlantsGene:SORBI_3008G101900
UniParc:UPI0001A88461	RefSeq:XP_002443209.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:48459934..48462881

Molecular Weight (calculated)

25292.0 Da

IEP (calculated)

7.100

GRAVY (calculated)

-0.338

Length

228 amino acids

Sequence
(BLAST)

001: MAMSISVGCV RGDSGTVLAP SASSLRPPLR RAAGPKGHFC TFPHGASSNH NRLCIEHQRC SRSSTQTYAL SRKDFSPITQ DVEGFLHNVV NMGFLDRLKL
101: AWKIMFSAPT IKDTSNANIA KQRLKMILFS DRCEVSDEAK KKIVEHVIEA LSEFVEIESR DNVQVDISTD AGLGTVYSVT VPVRRVKPEY QESEEQYRGK
201: IVGVDFKDTG ESSGNVDVTF DFFVPNEN

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.