Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P18770_001 | Banana | plastid | 68.12 | 68.12 |
| VIT_14s0108g01300.t01 | Wine grape | plastid | 57.21 | 56.22 |
| KRH70831 | Soybean | plastid | 54.15 | 53.45 |
| PGSC0003DMT400072828 | Potato | plastid | 53.71 | 52.56 |
| Bra038308.1-P | Field mustard | cytosol | 44.98 | 52.55 |
| Solyc05g012710.2.1 | Tomato | plastid | 53.28 | 52.14 |
| CDY28547 | Canola | plastid | 50.22 | 51.8 |
| EES17047 | Sorghum | plastid | 51.53 | 51.75 |
| KRH74964 | Soybean | plastid | 52.4 | 51.72 |
| Zm00001d023760_P001 | Maize | plastid | 51.09 | 51.32 |
| CDY44064 | Canola | plastid | 49.34 | 51.13 |
| TraesCS5B01G114800.1 | Wheat | plastid | 52.4 | 51.06 |
| TraesCS5A01G107500.1 | Wheat | plastid | 52.4 | 50.85 |
| Os12t0498400-01 | Rice | plastid | 51.97 | 50.42 |
| TraesCS5D01G117000.1 | Wheat | plastid | 51.53 | 50.0 |
| CDY40918 | Canola | plastid | 48.47 | 49.55 |
| AT1G69390.1 | Thale cress | plastid | 49.34 | 49.34 |
| Bra004378.1-P | Field mustard | plastid | 47.16 | 48.87 |
| CDX95938 | Canola | plastid | 47.16 | 48.87 |
| HORVU5Hr1G035440.4 | Barley | plastid | 51.53 | 47.97 |
| CDY51505 | Canola | cytosol | 19.65 | 45.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P11640_001 | EnsemblPlants:GSMUA_Achr10T11640_001 | EnsemblPlantsGene:GSMUA_Achr10G11640_001 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0032955 | GO:GO:0051301 | InterPro:MinE | PANTHER:PTHR33404 | PANTHER:PTHR33404:SF8 |
| PFAM:PF03776 | UniParc:UPI000296B3F3 | UniProt:M0RHE0 | MapMan:13.6.1.2.3 | : | : |
Description
Putative Cell division topological specificity factor [Source:GMGC_GENE;Acc:GSMUA_Achr10G11640_001]
Coordinates
chr10:+:21023736..21028173
Molecular Weight (calculated)
25402.2 Da
IEP (calculated)
9.089
GRAVY (calculated)
-0.342
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISGDLKVF VGAFASHPGH RPPKPTVPFS KIRFGRVPNG ASDLRIVQKW LRAASPASST VKHSQVCHGM GGNKLSPTVN QDAEGFLLNV VNMSFFDRLS
101: LAWRILFPTT KERNNSNASI AKQRLKMILF SDRCDISDEA KQKIVSNVIE ALSEFVEIDS QDKVQLNIST DTDLGTIYSV TVPVRRVRPG YQDSEEDYSG
201: KISNIEYKDT GETSGTVDVT FDFFLPNKK
101: LAWRILFPTT KERNNSNASI AKQRLKMILF SDRCDISDEA KQKIVSNVIE ALSEFVEIDS QDKVQLNIST DTDLGTIYSV TVPVRRVRPG YQDSEEDYSG
201: KISNIEYKDT GETSGTVDVT FDFFLPNKK
001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
Arabidopsis Description
MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.