Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95938 | Canola | plastid | 92.41 | 93.67 |
| CDY44064 | Canola | plastid | 79.91 | 81.0 |
| CDY28547 | Canola | plastid | 79.91 | 80.63 |
| AT1G69390.1 | Thale cress | plastid | 78.57 | 76.86 |
| CDY51505 | Canola | cytosol | 29.46 | 66.0 |
| VIT_01s0011g00270.t01 | Wine grape | plastid | 60.71 | 60.44 |
| KRH70831 | Soybean | plastid | 59.82 | 57.76 |
| KRH74964 | Soybean | plastid | 59.38 | 57.33 |
| PGSC0003DMT400072828 | Potato | plastid | 59.38 | 56.84 |
| Solyc05g012710.2.1 | Tomato | plastid | 58.48 | 55.98 |
| VIT_14s0108g01300.t01 | Wine grape | plastid | 54.02 | 51.93 |
| GSMUA_Achr10P... | Banana | plastid | 49.55 | 48.47 |
| GSMUA_Achr3P18770_001 | Banana | plastid | 48.66 | 47.6 |
| Os12t0498400-01 | Rice | plastid | 49.55 | 47.03 |
| Zm00001d023760_P001 | Maize | plastid | 46.43 | 45.61 |
| TraesCS5B01G114800.1 | Wheat | plastid | 47.77 | 45.53 |
| TraesCS5A01G107500.1 | Wheat | plastid | 47.32 | 44.92 |
| TraesCS5D01G117000.1 | Wheat | plastid | 46.88 | 44.49 |
| EES17047 | Sorghum | plastid | 45.09 | 44.3 |
| HORVU5Hr1G035440.4 | Barley | plastid | 46.43 | 42.28 |
Protein Annotations
| EnsemblPlants:CDY40918 | EnsemblPlantsGene:GSBRNA2T00071968001 | GO:A0A078HVU7 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0032955 | GO:GO:0051301 | InterPro:MinE | PANTHER:PTHR33404 | PANTHER:PTHR33404:SF8 |
| PFAM:PF03776 | ProteinID:CDY40918 | ProteinID:CDY40918.1 | unigene:Bna.3799 | UniParc:UPI0004EEFC8A | UniProt:A0A078HVU7 |
| MapMan:13.6.1.2.3 | : | : | : | : | : |
Description
BnaC06g30560DBnaC06g30560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVU7]
Coordinates
chrLK032484:+:119529..120760
Molecular Weight (calculated)
24784.4 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.208
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISGNLRIS ASLLTPYHHH PKCLSLPSSS KVDFSGFVGS GVNILEPYKC PPGVSIIIRG DTRGKARNTG GDYELSPSPA QQEVESFLLN AINMSFFDRL
101: NLAWKIIFPS HASKRSSNAR IAKQRLKMIL FSDRCAVSDE AKRKIVNNIV HALSDFVEIE SEEKVQLNVA TDGDLGTIYS VTVPVRRVKA EYQDVDEVGS
201: ISNVDYKDTL DGSVDVRFDF YVPE
101: NLAWKIIFPS HASKRSSNAR IAKQRLKMIL FSDRCAVSDE AKRKIVNNIV HALSDFVEIE SEEKVQLNVA TDGDLGTIYS VTVPVRRVKA EYQDVDEVGS
201: ISNVDYKDTL DGSVDVRFDF YVPE
001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE
Arabidopsis Description
MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.