CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73132
CDX80403
CDX88064
CDX95938
CDY11108
CDY28547
CDY40918
CDY44064
CDY51505
CDY64472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	CDX95938	AT1G69390.1	16146521
AT1G69390.1	CDY28547	AT1G69390.1	16146521
AT1G69390.1	CDY40918	AT1G69390.1	16146521
AT1G69390.1	CDY44064	AT1G69390.1	16146521
AT1G69390.1	CDY51505	AT1G69390.1	16146521
AT1G69390.1	CDX73132	AT1G75010.1	17304239
AT1G69390.1	CDY64472	AT1G75010.1	17304239
AT1G69390.1	CDX80403	AT5G24020.1	16014621
AT1G69390.1	CDX88064	AT5G24020.1	16014621
AT1G69390.1	CDY11108	AT5G24020.1	16014621
AT1G69390.1	CDX80403	AT5G24020.1	16146521
AT1G69390.1	CDX88064	AT5G24020.1	16146521
AT1G69390.1	CDY11108	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004378.1-P	Field mustard	plastid	99.55	99.55
CDY40918	Canola	plastid	93.67	92.41
CDY28547	Canola	plastid	80.54	80.18
CDY44064	Canola	plastid	80.09	80.09
AT1G69390.1	Thale cress	plastid	79.64	76.86
CDY51505	Canola	cytosol	30.32	67.0
VIT_01s0011g00270.t01	Wine grape	plastid	61.54	60.44
KRH70831	Soybean	plastid	59.73	56.9
PGSC0003DMT400072828	Potato	plastid	60.18	56.84
KRH74964	Soybean	plastid	59.28	56.47
Solyc05g012710.2.1	Tomato	plastid	59.28	55.98
VIT_14s0108g01300.t01	Wine grape	plastid	55.66	52.79
GSMUA_Achr3P18770_001	Banana	plastid	48.87	47.16
GSMUA_Achr10P...	Banana	plastid	48.87	47.16
Os12t0498400-01	Rice	plastid	49.77	46.61
Zm00001d023760_P001	Maize	plastid	47.06	45.61
TraesCS5B01G114800.1	Wheat	plastid	48.42	45.53
TraesCS5A01G107500.1	Wheat	plastid	47.96	44.92
TraesCS5D01G117000.1	Wheat	plastid	47.51	44.49
EES17047	Sorghum	plastid	45.25	43.86
HORVU5Hr1G035440.4	Barley	plastid	47.51	42.68

Protein Annotations

EnsemblPlants:CDX95938	EnsemblPlantsGene:GSBRNA2T00101953001	GO:A0A078E980	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0032955	GO:GO:0051301	InterPro:MinE	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8
PFAM:PF03776	ProteinID:CDX95938	ProteinID:CDX95938.1	UniParc:UPI0004EE2551	MapMan:13.6.1.2.3	:

Description

BnaA07g27930D

Coordinates

chrLK031892:-:173793..175226

Molecular Weight (calculated)

24521.1 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.205

Length

221 amino acids

Sequence
(BLAST)

001: MAITGNLRIS ASLLTPYHQH PKCLSLPSSS KVDFSGFVSS GVNILEPYKC PPGVSRAQTK VLARNTGGDY ELSPSPAEQE VESFLLNAIN MSFFDRLNLA
101: WKIIFPSHAS KRSSNARIAK QRLKMILFSD RCAVSDEAKR KIVNNIVHAL SDFVEIESEE KVQLNVATDG DLGTIYSVTV PVRRVKAEYQ DVDEVGSITN
201: VDYKDTLDGS VDVRFDFYVP E

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.