CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73132
CDX80403
CDX88064
CDX95938
CDY11108
CDY28547
CDY40918
CDY44064
CDY51505
CDY64472

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	CDX95938	AT1G69390.1	16014621
AT5G24020.1	CDY28547	AT1G69390.1	16014621
AT5G24020.1	CDY40918	AT1G69390.1	16014621
AT5G24020.1	CDY44064	AT1G69390.1	16014621
AT5G24020.1	CDY51505	AT1G69390.1	16014621
AT5G24020.1	CDX95938	AT1G69390.1	16146521
AT5G24020.1	CDY28547	AT1G69390.1	16146521
AT5G24020.1	CDY40918	AT1G69390.1	16146521
AT5G24020.1	CDY44064	AT1G69390.1	16146521
AT5G24020.1	CDY51505	AT1G69390.1	16146521
AT5G24020.1	CDX73132	AT1G75010.1	17304239
AT5G24020.1	CDY64472	AT1G75010.1	17304239
AT5G24020.1	CDX80403	AT5G24020.1	16014621
AT5G24020.1	CDX88064	AT5G24020.1	16014621
AT5G24020.1	CDY11108	AT5G24020.1	16014621
AT5G24020.1	CDX80403	AT5G24020.1	16146521
AT5G24020.1	CDX88064	AT5G24020.1	16146521
AT5G24020.1	CDY11108	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009723.1-P	Field mustard	cytosol	75.64	33.91
GSMUA_Achr9P23510_001	Banana	plastid	74.36	19.86
AT5G24020.1	Thale cress	plastid	76.92	18.4
CDX88064	Canola	plastid	76.92	18.35
CDX80403	Canola	plastid	76.92	18.29
KRH08863	Soybean	plastid	71.79	17.28
VIT_16s0050g01070.t01	Wine grape	plastid	73.08	17.12
Solyc03g007980.1.1	Tomato	plastid	69.23	16.31
PGSC0003DMT400026256	Potato	plastid	69.23	16.27
Os06t0106000-01	Rice	plastid	62.82	16.01
Zm00001d035898_P001	Maize	plastid	62.82	15.56
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	61.54	15.43
TraesCS7D01G014700.1	Wheat	plastid	61.54	15.38
TraesCS4A01G474300.1	Wheat	plastid	61.54	15.34
EER87699	Sorghum	plastid	60.26	15.06
KRH38382	Soybean	cytosol	70.51	14.47
HORVU7Hr1G001800.1	Barley	plastid	61.54	14.24
KRH48126	Soybean	extracellular	24.36	10.11
KRG89709	Soybean	plastid	2.56	1.4

Protein Annotations

EnsemblPlants:CDY11108	EnsemblPlantsGene:GSBRNA2T00049088001	ProteinID:CDY11108	ProteinID:CDY11108.1	SEG:seg	UniParc:UPI0004EE24A7
UniProt:A0A078FGD8	MapMan:35.1	:	:	:	:

Description

BnaC06g23600DBnaC06g23600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGD8]

Coordinates

chrLK032009:-:353318..354090

Molecular Weight (calculated)

8850.7 Da

IEP (calculated)

11.749

GRAVY (calculated)

-0.688

Length

78 amino acids

Sequence
(BLAST)

1: MRRRLRRRNA ARNPSSPEKR CASSSTNRGF PLVLNKPPTL AGLAFEQAAW RLVEQDSMKA VMVEEEPKKH GFFSFFGG

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.