Factsheet for PGSC0003DMT400026256

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026256
PGSC0003DMT400072828

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	PGSC0003DMT400072828	AT1G69390.1	16014621
AT5G24020.1	PGSC0003DMT400072828	AT1G69390.1	16146521
AT5G24020.1	PGSC0003DMT400026256	AT5G24020.1	16014621
AT5G24020.1	PGSC0003DMT400026256	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007980.1.1	Tomato	plastid	97.59	97.89
Bra009723.1-P	Field mustard	cytosol	47.89	91.38
VIT_16s0050g01070.t01	Wine grape	plastid	85.54	85.29
CDX88064	Canola	plastid	81.33	82.57
AT5G24020.1	Thale cress	plastid	80.72	82.21
CDX80403	Canola	plastid	80.42	81.4
KRH08863	Soybean	plastid	79.22	81.17
GSMUA_Achr9P23510_001	Banana	plastid	68.98	78.42
KRH48126	Soybean	extracellular	44.28	78.19
CDY11108	Canola	mitochondrion	16.27	69.23
KRH38382	Soybean	cytosol	78.61	68.68
Os06t0106000-01	Rice	plastid	61.45	66.67
TraesCS7A01G017400.2	Wheat	mitochondrion, plastid	61.75	65.92
TraesCS7D01G014700.1	Wheat	plastid	61.75	65.71
TraesCS4A01G474300.1	Wheat	plastid	61.75	65.5
EER87699	Sorghum	plastid	61.14	65.06
Zm00001d035898_P001	Maize	plastid	60.84	64.13
HORVU7Hr1G001800.1	Barley	plastid	62.65	61.72
KRG89709	Soybean	plastid	21.08	48.95

Protein Annotations

EMBL:DQ118109	EnsemblPlants:PGSC0003DMT400026256	EnsemblPlantsGene:PGSC0003DMG400010127	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016887	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PANTHER:PTHR43384
PANTHER:PTHR43384:SF6	PFAM:PF01656	PGSC:PGSC0003DMG400010127	ProteinID:AAZ23778	ProteinID:AAZ23778.1	SEG:seg
SUPFAM:SSF52540	TIGRFAMs:TIGR01968	UniParc:UPI000295838F	UniProt:M1AMX4	MapMan:13.6.1.2.1	:

Description

Plastid division regulator MinD [Source:PGSC_GENE;Acc:PGSC0003DMG400010127]

Coordinates

chr3:+:43921044..43922498

Molecular Weight (calculated)

36382.4 Da

IEP (calculated)

7.101

GRAVY (calculated)

0.017

Length

332 amino acids

Sequence
(BLAST)

001: MLSLQPLSNP KSSSLYSSSF IPPNSLSPKT LKPILAFRPS RNFYPSIHSM LQYNRKPQLA GDTPRVVVIT SGKGGVGKTT TTANIGLSLA RLGFSVVAID
101: CDVGLRNLDL LLGLENRVNY TVVEVLNGDC RLDQALVRDK RWSNFELLCI SKPRSKLPIG FGGKALVWLV DALKARDEGG PDFIIIDCPA GIDAGFITAI
201: TPANEAVLVT TPDITSLRDA DRVTGLLECD GIRDIKMIVN RVRTDMIKGE DMMSVLDVQE MLGLPLLGVI PEDSEVIRST NRGYPLVLNK PPALAGLAFE
301: QAAWRLVEQD SMETVMMEEE PKKRGFFSFF GR

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.