Factsheet for PGSC0003DMT400072828

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026256
PGSC0003DMT400072828

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	PGSC0003DMT400072828	AT1G69390.1	16146521
AT1G69390.1	PGSC0003DMT400026256	AT5G24020.1	16014621
AT1G69390.1	PGSC0003DMT400026256	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012710.2.1	Tomato	plastid	98.29	98.29
VIT_01s0011g00270.t01	Wine grape	plastid	64.53	67.11
KRH70831	Soybean	plastid	62.39	62.93
KRH74964	Soybean	plastid	61.54	62.07
CDY44064	Canola	plastid	57.69	61.09
CDY28547	Canola	plastid	57.27	60.36
Bra038308.1-P	Field mustard	cytosol	50.43	60.2
Bra004378.1-P	Field mustard	plastid	56.84	60.18
CDX95938	Canola	plastid	56.84	60.18
CDY40918	Canola	plastid	56.84	59.38
AT1G69390.1	Thale cress	plastid	56.84	58.08
CDY51505	Canola	cytosol	24.36	57.0
GSMUA_Achr3P18770_001	Banana	plastid	52.56	53.71
GSMUA_Achr10P...	Banana	plastid	52.56	53.71
TraesCS5B01G114800.1	Wheat	plastid	48.72	48.51
Os12t0498400-01	Rice	plastid	47.86	47.46
EES17047	Sorghum	plastid	46.15	47.37
TraesCS5A01G107500.1	Wheat	plastid	47.44	47.03
Zm00001d023760_P001	Maize	plastid	45.3	46.49
TraesCS5D01G117000.1	Wheat	plastid	46.58	46.19
HORVU5Hr1G035440.4	Barley	plastid	48.29	45.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400072828	EnsemblPlantsGene:PGSC0003DMG400028333	EntrezGene:102579754	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0032955	GO:GO:0051301	InterPro:MinE	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8
PFAM:PF03776	PGSC:PGSC0003DMG400028333	RefSeq:XP_006348727.1	SEG:seg	UniParc:UPI000294C90F	UniProt:M1CR11
MapMan:13.6.1.2.3	:	:	:	:	:

Description

Plastid division regulator MinE [Source:PGSC_GENE;Acc:PGSC0003DMG400028333]

Coordinates

chr5:-:211228..215102

Molecular Weight (calculated)

25754.3 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.210

Length

234 amino acids

Sequence
(BLAST)

001: MAISGDLRVS ATLVPYPKNP LRTSLPPSKV DFSAFLNGGS SSAEVLPKWS RLSSDSHSFR CHSRKPLGIL GDYKVAASSI SQEFDNLLLN AISMSFFERL
101: SLAWKIMFPP SPSASNSAAN IAKQRLRMIL FSDRCAVSDE AKQKIVSNVV SALSDFVEIE SQEKVQLSVS TDPDLGTIYS VTVPVRRVRS EYQVEDPTGT
201: ITNVEYKDTG DSSGSVDVKF DFYIPDENFN DYGM

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.