Factsheet for Solyc05g012710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007880.2.1
Solyc03g007980.1.1
Solyc05g012710.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	Solyc05g012710.2.1	AT1G69390.1	16146521
AT1G69390.1	Solyc01g007880.2.1	AT1G75010.1	17304239
AT1G69390.1	Solyc03g007980.1.1	AT5G24020.1	16014621
AT1G69390.1	Solyc03g007980.1.1	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072828	Potato	plastid	98.29	98.29
VIT_01s0011g00270.t01	Wine grape	plastid	63.25	65.78
KRH70831	Soybean	plastid	61.97	62.5
KRH74964	Soybean	plastid	60.68	61.21
CDY44064	Canola	plastid	56.84	60.18
CDY28547	Canola	plastid	56.84	59.91
Bra038308.1-P	Field mustard	cytosol	50.0	59.69
Bra004378.1-P	Field mustard	plastid	55.98	59.28
CDX95938	Canola	plastid	55.98	59.28
CDY40918	Canola	plastid	55.98	58.48
AT1G69390.1	Thale cress	plastid	55.98	57.21
CDY51505	Canola	cytosol	24.36	57.0
GSMUA_Achr3P18770_001	Banana	plastid	52.14	53.28
GSMUA_Achr10P...	Banana	plastid	52.14	53.28
TraesCS5B01G114800.1	Wheat	plastid	47.86	47.66
Os12t0498400-01	Rice	plastid	47.86	47.46
EES17047	Sorghum	plastid	45.3	46.49
TraesCS5A01G107500.1	Wheat	plastid	46.58	46.19
Zm00001d023760_P001	Maize	plastid	44.44	45.61
TraesCS5D01G117000.1	Wheat	plastid	45.73	45.34
HORVU5Hr1G035440.4	Barley	plastid	47.44	45.12

Protein Annotations

EnsemblPlants:Solyc05g012710.2.1	EnsemblPlantsGene:Solyc05g012710.2	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032955	GO:GO:0051301	InterPro:MinE	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8	PFAM:PF03776
SEG:seg	UniParc:UPI00027658C2	UniProt:K4BXZ3	MapMan:13.6.1.2.3	:	:

Description

Cell division topological specificity factor homolog, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G69390) UniProtKB/Swiss-Prot;Acc:Q9C4Z7]

Coordinates

chr5:+:5895799..5899691

Molecular Weight (calculated)

25817.3 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.238

Length

234 amino acids

Sequence
(BLAST)

001: MAISGDFRVS ATLVPYPKNP LRTSLPPSKV DFSAFLNGGS SSSEVLPKWS RLSSDSHSFR CHSRKPLGIL GDYKVAASSI SQEFDNLLLN AISMSFFERL
101: SLAWKIMFPP SPSASNSAAN VAKQRLRMIL FSDRCAVSDE AKQKIVSNVV SALSDFVEIE SQEKVQLSVS TDPDLGTIYS VTVPVRRVRS EYQVEDPTGT
201: ITNVEYKDTG DNSGSVDVKF DFYIPDENFN DYGM

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.