Factsheet for VIT_01s0011g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02140.t01
VIT_01s0011g00270.t01
VIT_14s0108g01300.t01
VIT_16s0050g01070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	VIT_01s0011g00270.t01	AT1G69390.1	16146521
AT1G69390.1	VIT_14s0108g01300.t01	AT1G69390.1	16146521
AT1G69390.1	VIT_01s0010g02140.t01	AT1G75010.1	17304239
AT1G69390.1	VIT_16s0050g01070.t01	AT5G24020.1	16014621
AT1G69390.1	VIT_16s0050g01070.t01	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072828	Potato	plastid	67.11	64.53
Solyc05g012710.2.1	Tomato	plastid	65.78	63.25
CDY44064	Canola	plastid	61.33	62.44
Bra038308.1-P	Field mustard	cytosol	53.78	61.73
CDY28547	Canola	plastid	60.89	61.71
Bra004378.1-P	Field mustard	plastid	60.44	61.54
CDX95938	Canola	plastid	60.44	61.54
KRH74964	Soybean	plastid	62.67	60.78
CDY40918	Canola	plastid	60.44	60.71
AT1G69390.1	Thale cress	plastid	61.33	60.26
KRH70831	Soybean	plastid	61.78	59.91
CDY51505	Canola	cytosol	25.78	58.0
VIT_14s0108g01300.t01	Wine grape	plastid	58.22	56.22

Protein Annotations

EntrezGene:100265788	wikigene:100265788	MapMan:13.6.1.2.3	EMBL:AM443377	ProteinID:CAN67389	ProteinID:CAN67389.1
ProteinID:CBI36508	ProteinID:CBI36508.3	UniProt:D7U192	EMBL:FN596498	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0032955	GO:GO:0051301	EntrezGene:LOC100265788	wikigene:LOC100265788
InterPro:MinE	PFAM:PF03776	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8	TIGR:TC64984	UniParc:UPI00015CE4E5
ArrayExpress:VIT_01s0011g00270	EnsemblPlantsGene:VIT_01s0011g00270	EnsemblPlants:VIT_01s0011g00270.t01	unigene:Vvi.3882	RefSeq:XP_002265574	RefSeq:XP_002265574.1

Description

No Description!

Coordinates

chr1_random:-:315715..320272

Molecular Weight (calculated)

24843.8 Da

IEP (calculated)

8.245

GRAVY (calculated)

-0.159

Length

225 amino acids

Sequence
(BLAST)

001: MAVSGDLRVV ATLSSYPTHP LRSSLLSSKV GFAGALNGES SIPDITPRWP SLVLNGHPVH CHSKRIFGIM GDNKLSPRSI SQEAESLLLN AINMNFLERL
101: NLAWKIIFPP QKTRHSNARI AKQRLQMILF SDRCAVSDEA KQKIVNNIVH ALSDFVEIES QDKVQLSVST DPNLGTVYSV TVPVRRVKPE YQAVDEMGTI
201: ANIEYKDNGD SSGSVDVRFD FVIPS

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.