Factsheet for Bra004378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004378.1-P
Bra009723.1-P
Bra015875.1-P
Bra038308.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	Bra004378.1-P	AT1G69390.1	16146521
AT1G69390.1	Bra038308.1-P	AT1G69390.1	16146521
AT1G69390.1	Bra015875.1-P	AT1G75010.1	17304239
AT1G69390.1	Bra009723.1-P	AT5G24020.1	16014621
AT1G69390.1	Bra009723.1-P	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95938	Canola	plastid	99.55	99.55
Bra038308.1-P	Field mustard	cytosol	68.33	77.04
AT1G69390.1	Thale cress	plastid	79.64	76.86
VIT_01s0011g00270.t01	Wine grape	plastid	61.54	60.44
KRH70831	Soybean	plastid	59.73	56.9
PGSC0003DMT400072828	Potato	plastid	60.18	56.84
KRH74964	Soybean	plastid	59.28	56.47
Solyc05g012710.2.1	Tomato	plastid	59.28	55.98
VIT_14s0108g01300.t01	Wine grape	plastid	55.66	52.79
GSMUA_Achr10P...	Banana	plastid	48.87	47.16
GSMUA_Achr3P18770_001	Banana	plastid	48.87	47.16
Os12t0498400-01	Rice	plastid	49.77	46.61
Zm00001d023760_P001	Maize	plastid	47.06	45.61
TraesCS5B01G114800.1	Wheat	plastid	48.42	45.53
TraesCS5A01G107500.1	Wheat	plastid	47.96	44.92
TraesCS5D01G117000.1	Wheat	plastid	47.51	44.49
EES17047	Sorghum	plastid	45.25	43.86
HORVU5Hr1G035440.4	Barley	plastid	47.51	42.68

Protein Annotations

EnsemblPlants:Bra004378.1	EnsemblPlants:Bra004378.1-P	EnsemblPlantsGene:Bra004378	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0032955	GO:GO:0051301	InterPro:MinE	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8
PFAM:PF03776	UniParc:UPI000254183E	UniProt:M4CJJ4	MapMan:13.6.1.2.3	:	:

Description

AT1G69390 (E=5e-098) ATMINE1 | ATMINE1 (Arabidopsis homologue of bacterial MinE 1); protein binding

Coordinates

chrA07:+:18330551..18331720

Molecular Weight (calculated)

24537.1 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.181

Length

221 amino acids

Sequence
(BLAST)

001: MAITGNLRIS ASLLTPYHQH PKCLSLPSSS KVDFSGFVSS GVNILEPYKC LPGVSRAQTK VLARNTGGDY ELSPSPAEQE VESFLLNAIN MSFFDRLNLA
101: WKIIFPSHAS KRSSNARIAK QRLKMILFSD RCAVSDEAKR KIVNNIVHAL SDFVEIESEE KVQLNVATDG DLGTIYSVTV PVRRVKAEYQ DVDEVGSITN
201: VDYKDTLDGS VDVRFDFYVP E

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.