Factsheet for HORVU5Hr1G035440.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G035440.4
HORVU5Hr1G088120.2
HORVU7Hr1G001800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69390.1	HORVU5Hr1G035440.4	AT1G69390.1	16146521
AT1G69390.1	HORVU5Hr1G088120.2	AT1G75010.1	17304239
AT1G69390.1	HORVU7Hr1G001800.1	AT5G24020.1	16014621
AT1G69390.1	HORVU7Hr1G001800.1	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G107500.1	Wheat	plastid	88.62	92.37
TraesCS5D01G117000.1	Wheat	plastid	88.21	91.95
TraesCS5B01G114800.1	Wheat	plastid	87.4	91.49
EES17047	Sorghum	plastid	71.14	76.75
Os12t0498400-01	Rice	plastid	72.76	75.85
Zm00001d023760_P001	Maize	plastid	67.89	73.25
GSMUA_Achr10P...	Banana	plastid	47.97	51.53
GSMUA_Achr3P18770_001	Banana	plastid	47.56	51.09
Bra038308.1-P	Field mustard	cytosol	40.65	51.02
KRH70831	Soybean	plastid	47.56	50.43
KRH74964	Soybean	plastid	47.56	50.43
CDY44064	Canola	plastid	43.5	48.42
PGSC0003DMT400072828	Potato	plastid	45.94	48.29
CDX95938	Canola	plastid	42.68	47.51
Bra004378.1-P	Field mustard	plastid	42.68	47.51
Solyc05g012710.2.1	Tomato	plastid	45.12	47.44
CDY28547	Canola	plastid	42.28	46.85
CDY40918	Canola	plastid	42.28	46.43
VIT_14s0108g01300.t01	Wine grape	plastid	43.9	46.35
AT1G69390.1	Thale cress	plastid	41.87	44.98
CDY51505	Canola	cytosol	17.89	44.0

Protein Annotations

EnsemblPlants:HORVU5Hr1G035440.4	EnsemblPlantsGene:HORVU5Hr1G035440	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032955	GO:GO:0051301	InterPro:MinE	PANTHER:PTHR33404	PANTHER:PTHR33404:SF8	PFAM:PF03776
SEG:seg	UniParc:UPI000B46510E	UniProt:A0A287QUZ0	MapMan:13.6.1.2.3	:	:

Description

No Description!

Coordinates

chrchr5H:-:246408164..246427612

Molecular Weight (calculated)

26966.2 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.152

Length

246 amino acids

Sequence
(BLAST)

001: KSKTLALRAP LVMATATAIS CRVSGEASAI LAPSASSLPA PLRRAANSKG CFRAFPRGTS SRLMLTLGRL RVERQSCLVR SSACSALSRR DFSPVTQDMD
101: GFLHSIVNMG FLDRLKLAWE IIFPAPTIHE NTNASIAKQR LKMILFSDRC EVSDEAKKKI VESVVEALSE FVEIESRDNV QVDISTDAGL GTVYSVTVPV
201: RRVKPEYQES EEQYGGKIVG VDFKDTGESS GNVDVTFDFY VPNENH

Best Arabidopsis Sequence Match ( AT1G69390.1 )
(BLAST)

001: MAMSSGTLRI SATLVSPYHH HHRNRLSLPS SSSKVDFTGF ISNGVNSLET QKCTPGLAIS RENTRGQVKV LARNTGDYEL SPSPAEQEIE SFLYNAINMG
101: FFDRLNLAWK IIFPSHASRR SSNARIAKQR LKMILFSDRC DVSDEAKRKI VNNIIHALSD FVEIESEEKV QLNVSTDGDL GTIYSVTVPV RRVKPEYQDV
201: DEAGTITNVE YKDTRDGSVD VRFDFYVPE

Arabidopsis Description

MINE1Cell division topological specificity factor homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C4Z7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.