Factsheet for TraesCS7A01G017400.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G474300.1
TraesCS5A01G107500.1
TraesCS5A01G356200.1
TraesCS5B01G114800.1
TraesCS5B01G358700.1
TraesCS5D01G117000.1
TraesCS5D01G365000.1
TraesCS7A01G017400.2
TraesCS7D01G014700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24020.1	TraesCS5A01G107500.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5B01G114800.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5D01G117000.1	AT1G69390.1	16014621
AT5G24020.1	TraesCS5A01G107500.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5B01G114800.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5D01G117000.1	AT1G69390.1	16146521
AT5G24020.1	TraesCS5A01G356200.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS5B01G358700.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS5D01G365000.1	AT1G75010.1	17304239
AT5G24020.1	TraesCS4A01G474300.1	AT5G24020.1	16014621
AT5G24020.1	TraesCS7A01G017400.2	AT5G24020.1	16014621
AT5G24020.1	TraesCS7D01G014700.1	AT5G24020.1	16014621
AT5G24020.1	TraesCS4A01G474300.1	AT5G24020.1	16146521
AT5G24020.1	TraesCS7A01G017400.2	AT5G24020.1	16146521
AT5G24020.1	TraesCS7D01G014700.1	AT5G24020.1	16146521

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G474300.1	Wheat	plastid	97.75	97.12
Os06t0106000-01	Rice	plastid	91.0	92.48
Zm00001d035898_P001	Maize	plastid	90.03	88.89
EER87699	Sorghum	plastid	88.75	88.46
HORVU7Hr1G001800.1	Barley	plastid	90.68	83.68
Bra009723.1-P	Field mustard	cytosol	41.8	74.71
GSMUA_Achr9P23510_001	Banana	plastid	63.67	67.81
KRH08863	Soybean	plastid	68.17	65.43
AT5G24020.1	Thale cress	plastid	67.52	64.42
CDX88064	Canola	plastid	66.88	63.61
CDX80403	Canola	plastid	66.88	63.41
VIT_16s0050g01070.t01	Wine grape	plastid	67.85	63.36
Solyc03g007980.1.1	Tomato	plastid	65.92	61.93
PGSC0003DMT400026256	Potato	plastid	65.92	61.75
CDY11108	Canola	mitochondrion	15.43	61.54
KRH48126	Soybean	extracellular	36.33	60.11
KRH38382	Soybean	cytosol	67.2	55.0
KRG89709	Soybean	plastid	16.72	36.36

Protein Annotations

EnsemblPlants:TraesCS7A01G017400.2	EnsemblPlantsGene:TraesCS7A01G017400	Gene3D:3.40.50.300	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016887	InterPro:CobQ/CobB/MinD/ParA_Nub-bd_dom	InterPro:MinD	InterPro:MinD_bac-type	InterPro:P-loop_NTPase	PANTHER:PTHR43384
PANTHER:PTHR43384:SF6	PFAM:PF01656	PIRSF:PIRSF003092	SEG:seg	SUPFAM:SSF52540	TIGR:cd02036
TIGRFAMs:TIGR01968	MapMan:13.6.1.2.1	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:7584238..7586017

Molecular Weight (calculated)

32810.1 Da

IEP (calculated)

7.963

GRAVY (calculated)

0.112

Length

311 amino acids

Sequence
(BLAST)

001: MAFAPRLLLP PRPPLPAPAR ASARHNGGGG RTAPELSGPT PRVVVVTSGK GGVGKTTTTA NLAASLARLG LPVVAVDADA GLRNLDLLLG LENRVNLTAA
101: DVLAGDCRLD QALVRHRSLR GLHLLCLSKP RSKLPLAFGS KTLTWVADAL RRGADPPAFI LIDCPAGVDA GFVTAIAPAE EAVLVTTPDI TALRDADRVA
201: GLLECDGIKD IKIIVNRVRP DLVRGEDMMS ALDVQEMLGL PLLGVVPEDS EVIRSTNRGM PLVLTDPPTP AGLALEQATW RLVERDAMTA VMVEEQERPK
301: KKGGFFSFFG G

Best Arabidopsis Sequence Match ( AT5G24020.1 )
(BLAST)

001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG

Arabidopsis Description

MIND1Putative septum site-determining protein minD homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MBA2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.