Factsheet for Solyc02g079050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 26471654

msms PMID: 26471654 doi

O López-Vidal, D Camejo, F Rivera-Cabrera, M Konigsberg, JM Villa-Hernández, JA Mendoza-Espinoza, LJ Pérez-Flores, F Sevilla, A Jiménez, F Díaz de León-Sánchez

Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0181g00190.t01	Wine grape	cytosol	41.87	73.68
Zm00001d052917_P001	Maize	cytosol	7.8	73.17
VIT_00s0181g00210.t01	Wine grape	cytosol	71.52	71.34
GSMUA_Achr10P...	Banana	cytosol	9.1	70.71
KRH49954	Soybean	cytosol	68.4	67.7
AT4G21530.1	Thale cress	cytosol	64.5	63.84
CDX79070	Canola	cytosol	63.85	63.52
Bra013534.1-P	Field mustard	cytosol	63.59	63.26
CDX82833	Canola	cytosol	63.46	63.13
Os02t0785900-00	Rice	cytosol	11.7	62.07
GSMUA_Achr10P...	Banana	extracellular, golgi	37.97	59.71
TraesCSU01G081200.2	Wheat	cytosol	54.36	53.94
TraesCS6B01G377000.1	Wheat	cytosol	54.23	53.74
TraesCS6D01G327000.1	Wheat	cytosol	53.84	53.49
EES05908	Sorghum	cytosol	52.93	52.86
Zm00001d052072_P003	Maize	cytosol	52.67	51.79
Zm00001d040015_P001	Maize	cytosol	8.71	47.52
GSMUA_Achr10P...	Banana	mitochondrion	13.78	44.73
Zm00001d035596_P001	Maize	cytosol	10.27	39.3
Zm00001d038666_P002	Maize	cytosol	7.15	39.01
Zm00001d045047_P002	Maize	nucleus, plastid	6.5	33.33

Protein Annotations

MapMan:13.3.4.1.1.1.2	InterPro:APC4	InterPro:APC4_long_dom	InterPro:Apc4_WD40_dom	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005680	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0030071	GO:GO:0031145	GO:GO:0048481	InterPro:IPR001680	InterPro:IPR017986
UniProt:K4B9C9	PFAM:PF12894	PFAM:PF12896	PFscan:PS50294	PANTHER:PTHR13260	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc02g079050.2	EnsemblPlants:Solyc02g079050.2.1	UniParc:UPI0002768697	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Anaphase-promoting complex subunit 4 [Source:Projected from Arabidopsis thaliana (AT4G21530) UniProtKB/Swiss-Prot;Acc:O65418]

Coordinates

chr2:-:43670952..43684720

Molecular Weight (calculated)

85714.3 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.122

Length

769 amino acids

Sequence
(BLAST)

001: METDENQRIL PFQLQFDKPI ASQIKIAEWN PEKDLLAMVT EDSKVLLHRF NWQRLWTVTP GKNITSICWR PDGKAIAVGL EDGTISLHDV ENGKLLRNIK
101: SHSADVVCLH WEEDGKKDMN SNTSSYEDRT SRFFPPPPRV PKMPGLVPGD SGFMDDGEDS FQELSNSSHQ RYNILCSGDK DGSICFNIFG IFPIGTVNIH
201: NLVVSSSLSS SNVASRLLNA SICKVALSKD LCHLVVLCNG ELITDEVDQG EGHHGLLGFH CLVLNTSIFS KRKTELHQVA QQASNIEDLS EVIRTSLSVM
301: SKIWSDAMHT FHEKFNAVST LIADHGLDST PQDEFLSLLG GARASPPLHQ FLENSLGEAG LKRVAKAVNG AGKELQLIVL DHLQPAAEII GFRIGELRGL
401: SKWRARYKGI GLDEKLMDNA TERAGMLLVQ VERFMRVLAS VVQQFSNFFS WLLKSVKILM AEPSDQLPFN SELVIIFLKF LYDQDPVRQL LELSEVDSSV
501: EVDLETMERI KQLAHFGGFS DLEYLKRTLS QEFQQMEACF KDAFEMPFST ISEKLLCEDL LPLFPFASSS KLKPYKVPAS VSYYEDMLHD ASDSEIHQHT
601: LTSYISFKLP DDSLSVTNCI GIVRGLARDL SKVDSIRDPI EAALLCIPDG YHCIDLSLYK EGQIVLLLNE TATTSESSGN AFMMILQAGD LSFVSLSRST
701: APNSWKLHEL QDSAIYLQLE SEKVRSIPHS VVSPLAVSAS RGVACVFAAR KRALVYILDE DEDEVSDTE

Best Arabidopsis Sequence Match ( AT4G21530.1 )
(BLAST)

001: MSEMASDEEE NIIPFQLQFD KPIPFQIKIA EWNPEKDLLA MVTEDSKILL HRFNWQRLWT ISPGKPVTSL CWRPDGKAIA VGLEDGTISL HDVENGKLLR
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK

Arabidopsis Description

APC4Anaphase-promoting complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O65418]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.