Factsheet for Zm00001d045047_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052917_P001	Maize	cytosol	36.0	65.85
GSMUA_Achr10P...	Banana	cytosol	33.33	50.51
Os02t0785900-00	Rice	cytosol	44.0	45.52
Zm00001d040015_P001	Maize	cytosol	8.67	9.22
Zm00001d052072_P003	Maize	cytosol	46.0	8.82
KRH49954	Soybean	cytosol	34.0	6.56
AT4G21530.1	Thale cress	cytosol	34.0	6.56
Solyc02g079050.2.1	Tomato	mitochondrion	33.33	6.5
VIT_00s0181g00210.t01	Wine grape	cytosol	33.33	6.49
Zm00001d035596_P001	Maize	cytosol	8.67	6.47
CDX82833	Canola	cytosol	32.67	6.34
CDX79070	Canola	cytosol	32.67	6.34
Bra013534.1-P	Field mustard	cytosol	32.67	6.34
GSMUA_Achr10P...	Banana	extracellular, golgi	3.33	1.02
GSMUA_Achr10P...	Banana	mitochondrion	0.0	0.0
VIT_00s0181g00190.t01	Wine grape	cytosol	0.0	0.0
Zm00001d038666_P002	Maize	cytosol	0.0	0.0

Protein Annotations

EntrezGene:103637954	MapMan:13.3.4.1.1.1.2	Gene3D:2.130.10.10	UniProt:A0A1D6NT76	InterPro:APC4	ProteinID:AQL01423.1
InterPro:Apc4_WD40_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030071	GO:GO:0031145
InterPro:IPR015943	PFAM:PF12894	PANTHER:PTHR13260	SUPFAM:SSF50978	UniParc:UPI0004DE812D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d045047	EnsemblPlants:Zm00001d045047_P002	EnsemblPlants:Zm00001d045047_T002	SEG:seg	:

Description

Anaphase-promoting complex subunit 4

Coordinates

chr9:-:10990818..10992939

Molecular Weight (calculated)

17075.5 Da

IEP (calculated)

11.008

GRAVY (calculated)

-0.664

Length

150 amino acids

Sequence
(BLAST)

001: MAEEQIEEAS MAIAGRGASW RSRSKRRPWP RRRPRRSSSS STSPSRSRIR EGVRKEGAQK SGQKYLSESD LQNADGHPEI DLAFVLLLPR RSLIKMAEWN
101: PEKDLLAMVT DDSKVLLHRF NWQRLWTISL GKCITSICWS PDGKIIALGT

Best Arabidopsis Sequence Match ( AT4G21530.1 )
(BLAST)

001: MSEMASDEEE NIIPFQLQFD KPIPFQIKIA EWNPEKDLLA MVTEDSKILL HRFNWQRLWT ISPGKPVTSL CWRPDGKAIA VGLEDGTISL HDVENGKLLR
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK

Arabidopsis Description

APC4Anaphase-promoting complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O65418]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.