Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79070 | Canola | cytosol | 98.19 | 98.19 |
| Bra013534.1-P | Field mustard | cytosol | 97.67 | 97.67 |
| AT4G21530.1 | Thale cress | cytosol | 87.84 | 87.39 |
| GSMUA_Achr10P... | Banana | cytosol | 8.8 | 68.69 |
| VIT_00s0181g00210.t01 | Wine grape | cytosol | 68.31 | 68.48 |
| VIT_00s0181g00190.t01 | Wine grape | cytosol | 38.03 | 67.28 |
| Zm00001d052917_P001 | Maize | cytosol | 7.12 | 67.07 |
| KRH49954 | Soybean | cytosol | 65.46 | 65.12 |
| Solyc02g079050.2.1 | Tomato | mitochondrion | 63.13 | 63.46 |
| Os02t0785900-00 | Rice | cytosol | 11.77 | 62.76 |
| GSMUA_Achr10P... | Banana | extracellular, golgi | 35.83 | 56.65 |
| TraesCSU01G081200.2 | Wheat | cytosol | 52.01 | 51.87 |
| TraesCS6D01G327000.1 | Wheat | cytosol | 51.88 | 51.81 |
| TraesCS6B01G377000.1 | Wheat | cytosol | 51.88 | 51.68 |
| EES05908 | Sorghum | cytosol | 50.84 | 51.04 |
| Zm00001d052072_P003 | Maize | cytosol | 50.58 | 50.0 |
| Zm00001d040015_P001 | Maize | cytosol | 8.67 | 47.52 |
| Zm00001d035596_P001 | Maize | cytosol | 10.61 | 40.8 |
| Zm00001d038666_P002 | Maize | cytosol | 6.73 | 36.88 |
| GSMUA_Achr10P... | Banana | mitochondrion | 10.61 | 34.6 |
| Zm00001d045047_P002 | Maize | nucleus, plastid | 6.34 | 32.67 |
Protein Annotations
| MapMan:13.3.4.1.1.1.2 | GO:A0A078D6J1 | InterPro:APC4 | InterPro:APC4_long_dom | InterPro:Apc4_WD40_dom | EnsemblPlants:CDX82833 |
| ProteinID:CDX82833 | ProteinID:CDX82833.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0030071 |
| GO:GO:0031145 | EnsemblPlantsGene:GSBRNA2T00138181001 | InterPro:IPR001680 | PFAM:PF12894 | PFAM:PF12896 | PANTHER:PTHR13260 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniPathway:UPA00143 | UniParc:UPI0004EE8832 | InterPro:WD40_repeat | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g12830D
Coordinates
chrLK031830:+:608275..613244
Molecular Weight (calculated)
87066.2 Da
IEP (calculated)
4.655
GRAVY (calculated)
-0.170
Length
773 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEEGEESS IPFQLQFDKP IPFQIKIAEW NPEKDLLAMV TEDSKILLHR FNWQRLWTIS PGRPVTSLCW RPDGKAIAVG LEDGTIALHD NGKLLRSLKP
101: HDVAVVCLNW EEDGQSNTDE IGKVSAYEDR TSRFFLPAPR APKMPGVVAG DSSFMDDGED SLAELSNASF RKFNVLCSGD RDGSICFNIF GIFQIGKINI
201: HELSVPVAYL DGHASCKLFN ATIYKVALSK DLCRLVVMCT GELRDCDIEP KEEKLNIDLH GLHCLAMDTS IFWKRKYELH QVAQQASNIE DLTEVIRESL
301: SVLSKQWADA MKTFHDKFHS LSTLIIDNGL ESSPQEEFLS LLGGARISPA LNQFLVNSLG EVGVKRVLKS VCGTGKELQL VVLDHLQPAA EIIGFRMGEL
401: RGLSRWRARY QGIGLDERLL DEATENAGLL LVQVQRFMMV LSSVVQQFSN FFNWLLKSIK YLMQEPNDQL MSYNSELLVV FLKFLYDQDP VKDLVDLSEA
501: DDDIEIDIKT IERVRQLIQF GGFSDTDFLR RTLAKEFQHM ESSFKRALQM PFTTISRKIS CLKLLPLCPL QLSTTQTRST IPMSISFYKN ELCADTPCES
601: GYTDYISFQV PDEAFPDIQN CIGIAKGFKQ NSNNQTNDYT SLEAVLLSVP SGYHCVDLSL YKDKELVLLM NETSANSEGS GEACMMVVQT GNLPFISISR
701: SSCLNQWELE DLKSSIVYLE VENEKVRKVP HSTIAPLAVS ASRGVACVFA ERRRALVYIL EEDEDEEEVS EDK
101: HDVAVVCLNW EEDGQSNTDE IGKVSAYEDR TSRFFLPAPR APKMPGVVAG DSSFMDDGED SLAELSNASF RKFNVLCSGD RDGSICFNIF GIFQIGKINI
201: HELSVPVAYL DGHASCKLFN ATIYKVALSK DLCRLVVMCT GELRDCDIEP KEEKLNIDLH GLHCLAMDTS IFWKRKYELH QVAQQASNIE DLTEVIRESL
301: SVLSKQWADA MKTFHDKFHS LSTLIIDNGL ESSPQEEFLS LLGGARISPA LNQFLVNSLG EVGVKRVLKS VCGTGKELQL VVLDHLQPAA EIIGFRMGEL
401: RGLSRWRARY QGIGLDERLL DEATENAGLL LVQVQRFMMV LSSVVQQFSN FFNWLLKSIK YLMQEPNDQL MSYNSELLVV FLKFLYDQDP VKDLVDLSEA
501: DDDIEIDIKT IERVRQLIQF GGFSDTDFLR RTLAKEFQHM ESSFKRALQM PFTTISRKIS CLKLLPLCPL QLSTTQTRST IPMSISFYKN ELCADTPCES
601: GYTDYISFQV PDEAFPDIQN CIGIAKGFKQ NSNNQTNDYT SLEAVLLSVP SGYHCVDLSL YKDKELVLLM NETSANSEGS GEACMMVVQT GNLPFISISR
701: SSCLNQWELE DLKSSIVYLE VENEKVRKVP HSTIAPLAVS ASRGVACVFA ERRRALVYIL EEDEDEEEVS EDK
001: MSEMASDEEE NIIPFQLQFD KPIPFQIKIA EWNPEKDLLA MVTEDSKILL HRFNWQRLWT ISPGKPVTSL CWRPDGKAIA VGLEDGTISL HDVENGKLLR
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK
Arabidopsis Description
APC4Anaphase-promoting complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O65418]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.