Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79070 | Canola | cytosol | 87.77 | 88.23 |
| Bra013534.1-P | Field mustard | cytosol | 87.64 | 88.1 |
| CDX82833 | Canola | cytosol | 87.39 | 87.84 |
| Zm00001d052917_P001 | Maize | cytosol | 7.59 | 71.95 |
| GSMUA_Achr10P... | Banana | cytosol | 9.01 | 70.71 |
| VIT_00s0181g00210.t01 | Wine grape | cytosol | 68.6 | 69.13 |
| VIT_00s0181g00190.t01 | Wine grape | cytosol | 38.48 | 68.42 |
| KRH49954 | Soybean | cytosol | 66.02 | 66.02 |
| Os02t0785900-00 | Rice | cytosol | 12.1 | 64.83 |
| Solyc02g079050.2.1 | Tomato | mitochondrion | 63.84 | 64.5 |
| GSMUA_Achr10P... | Banana | extracellular, golgi | 35.91 | 57.06 |
| TraesCS6B01G377000.1 | Wheat | cytosol | 51.99 | 52.06 |
| TraesCSU01G081200.2 | Wheat | cytosol | 51.87 | 52.0 |
| TraesCS6D01G327000.1 | Wheat | cytosol | 51.74 | 51.94 |
| EES05908 | Sorghum | cytosol | 51.09 | 51.56 |
| Zm00001d052072_P003 | Maize | cytosol | 50.84 | 50.51 |
| Zm00001d040015_P001 | Maize | cytosol | 9.14 | 50.35 |
| Zm00001d035596_P001 | Maize | cytosol | 10.94 | 42.29 |
| Zm00001d038666_P002 | Maize | cytosol | 7.21 | 39.72 |
| GSMUA_Achr10P... | Banana | mitochondrion | 11.07 | 36.29 |
| Zm00001d045047_P002 | Maize | nucleus, plastid | 6.56 | 34.0 |
Protein Annotations
| MapMan:13.3.4.1.1.1.2 | EntrezGene:828238 | ProteinID:AEE84463.1 | EMBL:AK228871 | InterPro:APC4 | InterPro:APC4_long_dom |
| ArrayExpress:AT4G21530 | EnsemblPlantsGene:AT4G21530 | RefSeq:AT4G21530 | TAIR:AT4G21530 | RefSeq:AT4G21530-TAIR-G | EnsemblPlants:AT4G21530.1 |
| TAIR:AT4G21530.1 | InterPro:Apc4_WD40_dom | Unigene:At.75275 | ProteinID:CAA18717.1 | ProteinID:CAB81260.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0030071 | GO:GO:0031145 | GO:GO:0048481 | GO:GO:0051301 | InterPro:IPR001680 |
| InterPro:IPR017986 | RefSeq:NP_193884.6 | UniProt:O65418 | PFAM:PF12894 | PFAM:PF12896 | PO:PO:0000293 |
| PFscan:PS50294 | PANTHER:PTHR13260 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0001A7B0FB | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
APC4Anaphase-promoting complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O65418]
Coordinates
chr4:+:11450552..11456007
Molecular Weight (calculated)
87424.7 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.189
Length
777 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEMASDEEE NIIPFQLQFD KPIPFQIKIA EWNPEKDLLA MVTEDSKILL HRFNWQRLWT ISPGKPVTSL CWRPDGKAIA VGLEDGTISL HDVENGKLLR
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.