Factsheet for Zm00001d052917_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	69.51	57.58
Os02t0785900-00	Rice	cytosol	76.83	43.45
Zm00001d045047_P002	Maize	nucleus, plastid	65.85	36.0
Zm00001d052072_P003	Maize	cytosol	87.8	9.21
Solyc02g079050.2.1	Tomato	mitochondrion	73.17	7.8
VIT_00s0181g00210.t01	Wine grape	cytosol	71.95	7.65
AT4G21530.1	Thale cress	cytosol	71.95	7.59
KRH49954	Soybean	cytosol	69.51	7.34
CDX82833	Canola	cytosol	67.07	7.12
CDX79070	Canola	cytosol	67.07	7.12
Bra013534.1-P	Field mustard	cytosol	67.07	7.12
GSMUA_Achr10P...	Banana	extracellular, golgi	8.54	1.43
Zm00001d035596_P001	Maize	cytosol	2.44	1.0
VIT_00s0181g00190.t01	Wine grape	cytosol	4.88	0.92
GSMUA_Achr10P...	Banana	mitochondrion	1.22	0.42
Zm00001d038666_P002	Maize	cytosol	0.0	0.0
Zm00001d040015_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:13.3.4.1.1.1.2	Gene3D:2.130.10.10	UniProt:A0A1D6QKV4	InterPro:APC4	ProteinID:AQK58342.1	InterPro:Apc4_WD40_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005680	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030071	GO:GO:0031145	InterPro:IPR001680
InterPro:IPR015943	PFAM:PF12894	PANTHER:PTHR13260	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00084483E8
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d052917	EnsemblPlants:Zm00001d052917_P001	EnsemblPlants:Zm00001d052917_T001

Description

Anaphase-promoting complex subunit 4

Coordinates

chr4:+:204742025..204742845

Molecular Weight (calculated)

9358.5 Da

IEP (calculated)

5.547

GRAVY (calculated)

0.205

Length

82 amino acids

Sequence
(BLAST)

1: MAEWNPEKDL LAMVTDDSKV LLHRFNWQRL WTISPGKCIT SICWSPDGKI IALGTEDGLI LLHDVEILKT SLFHDKLLII LS

Best Arabidopsis Sequence Match ( AT4G21530.1 )
(BLAST)

001: MSEMASDEEE NIIPFQLQFD KPIPFQIKIA EWNPEKDLLA MVTEDSKILL HRFNWQRLWT ISPGKPVTSL CWRPDGKAIA VGLEDGTISL HDVENGKLLR
101: NLKPHDVAVV CLNWEEDGQS NTDESGNFSV YEDRTSRFFP PAPRPPKMPG LVAGDSSFMD DGEDSLAELS NTSFRKFNIL CTGDRDGNIC FSIFGIFQIG
201: KINIHELSLP VPHLDEHASC KLFNASIYKV ALSKDLCRLV VMCTGELKDC DIKPREEKIN VQDLPGLHCL AMDTSIFWKR KYELHQVAQQ ASNIEDLTEV
301: IRASLSVMNK QWADAMKTFH EKFHSLSTLI IDNGLESSPQ EEFLSLLGGA RISPALNQFL VNSLGEVGVK RVLKSVCGTG KELQQVVLDH LQPAAEIIGF
401: RIGELRGLSR WRARYQGIGL DEMLLNEATE NTGLLLVQVQ RFMMVLSSVV QQFSNFFNWL VRSIKYLMQE PNDQLLSYNS ELLVVFLKFL YDQDPVKDLL
501: ELSEAGDDIE IDLKTIGRVK ELLQFGGFSE CDFLQRTLAK EFQHMESSFK MAFQMPFTTI SRKISCMKLL PLCPLQLSTT QTPTTIPMSL SFYKNELSDD
601: TPCQSGYTDY ISFQVPDETF PEISNCIGIA KGYKQNSNNE KNGYTSLEAV LLSVPNGYTC VDLSLYKDKE LVLLLNKTNT DSEGSGEACM MVVQTGDLAF
701: ISISGSSSLN QWELEDLKGS IVNLEMENEK VRKVPHSVIA PLAVSASRGV ACVFAERRRA LVYILEEDED EEISDEK

Arabidopsis Description

APC4Anaphase-promoting complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:O65418]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.