Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g076580.2.1 | Tomato | cytosol | 84.11 | 79.65 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 51.4 | 63.22 |
| Bra040769.1-P | Field mustard | cytosol | 49.53 | 53.54 |
| AT1G32310.1 | Thale cress | cytosol | 46.73 | 50.0 |
| CDY32305 | Canola | cytosol | 50.47 | 49.54 |
| CDY61823 | Canola | cytosol | 50.47 | 49.54 |
| KRH39569 | Soybean | cytosol, plastid | 50.47 | 48.21 |
| KRH74384 | Soybean | cytosol, plastid | 49.53 | 46.49 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 45.79 | 44.14 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 37.38 | 43.96 |
| Os10t0575950-01 | Rice | cytosol | 40.19 | 43.43 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 39.25 | 41.18 |
| OQU80353 | Sorghum | cytosol | 36.45 | 40.21 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 38.32 | 40.2 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 38.32 | 40.2 |
| KXG34154 | Sorghum | cytosol | 19.63 | 38.18 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 18.69 | 36.36 |
| EER94435 | Sorghum | cytosol | 40.19 | 35.54 |
| OQU76519 | Sorghum | extracellular | 25.23 | 18.88 |
| KXG30734 | Sorghum | extracellular | 23.36 | 15.72 |
Protein Annotations
| EntrezGene:102579877 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0007049 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009555 | GO:GO:0009556 |
| GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0045732 | GO:GO:0046621 |
| UniProt:M1B6Q4 | EnsemblPlantsGene:PGSC0003DMG400014800 | PGSC:PGSC0003DMG400014800 | EnsemblPlants:PGSC0003DMT400038358 | PANTHER:PTHR37387 | InterPro:SAMBA |
| UniParc:UPI000295A5E3 | RefSeq:XP_006352890.1 | SEG:seg | : | : | : |
Description
FAD-binding domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014800]
Coordinates
chr8:+:49184653..49188010
Molecular Weight (calculated)
11616.9 Da
IEP (calculated)
9.272
GRAVY (calculated)
-0.300
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGSSLTSS PARSSSSTMV MIGGNVGPSS STAVDDFNFP ADLISVQDRK DEALQVLKSD LMASLNKEVK SLDEDSWMFD GPRSRIHKIS RPGSSRRAKM
101: MVVFINM
101: MVVFINM
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.