Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30734 | Sorghum | extracellular | 76.22 | 68.55 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 42.66 | 67.03 |
| OQU80353 | Sorghum | cytosol | 41.26 | 60.82 |
| Os10t0575950-01 | Rice | cytosol | 41.96 | 60.61 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 41.96 | 58.82 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 41.26 | 57.84 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 41.26 | 57.84 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 20.98 | 54.55 |
| EER94435 | Sorghum | cytosol | 44.76 | 52.89 |
| KXG34154 | Sorghum | cytosol | 16.08 | 41.82 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 19.58 | 32.18 |
| AT1G32310.1 | Thale cress | cytosol | 22.38 | 32.0 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 23.78 | 30.63 |
| CDY61823 | Canola | cytosol | 23.08 | 30.28 |
| Bra040769.1-P | Field mustard | cytosol | 20.28 | 29.29 |
| KRH39569 | Soybean | cytosol, plastid | 22.38 | 28.57 |
| CDY32305 | Canola | cytosol | 21.68 | 28.44 |
| KRH74384 | Soybean | cytosol, plastid | 22.38 | 28.07 |
| Solyc08g076580.2.1 | Tomato | cytosol | 20.98 | 26.55 |
| PGSC0003DMT400038358 | Potato | plastid | 18.88 | 25.23 |
Protein Annotations
| EnsemblPlants:OQU76519 | EnsemblPlantsGene:SORBI_3010G159200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0010997 |
| GO:GO:0040007 | GO:GO:0046621 | InterPro:SAMBA | PANTHER:PTHR37387 | ProteinID:OQU76519 | ProteinID:OQU76519.1 |
| UniParc:UPI0009DC8C53 | UniProt:A0A1W0VTA3 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:46809407..46810109
Molecular Weight (calculated)
16109.4 Da
IEP (calculated)
4.935
GRAVY (calculated)
0.001
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSCCPARCL HVSLSLQHWF QIIAQTLLIK DTSSTRLRGW IREEPAARYD ELPATLTVLA AEDIADSIDA LYHKDEAMAE LKSEVMEALD DDSWMFAASR
101: SRINLVSSPV FLFLMNELCI FLTCNTYGKL SELGQASKKT RNF
101: SRINLVSSPV FLFLMNELCI FLTCNTYGKL SELGQASKKT RNF
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.