Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G193900.1 | Wheat | cytosol | 85.86 | 83.33 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 75.76 | 82.42 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 84.85 | 82.35 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 84.85 | 82.35 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 44.44 | 80.0 |
| OQU80353 | Sorghum | cytosol | 74.75 | 76.29 |
| EER94435 | Sorghum | cytosol | 84.85 | 69.42 |
| KXG34154 | Sorghum | cytosol | 30.3 | 54.55 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 52.53 | 46.85 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 37.37 | 42.53 |
| AT1G32310.1 | Thale cress | cytosol | 42.42 | 42.0 |
| OQU76519 | Sorghum | extracellular | 60.61 | 41.96 |
| Bra040769.1-P | Field mustard | cytosol | 41.41 | 41.41 |
| PGSC0003DMT400038358 | Potato | plastid | 43.43 | 40.19 |
| Solyc08g076580.2.1 | Tomato | cytosol | 44.44 | 38.94 |
| CDY61823 | Canola | cytosol | 42.42 | 38.53 |
| KRH39569 | Soybean | cytosol, plastid | 43.43 | 38.39 |
| KRH74384 | Soybean | cytosol, plastid | 43.43 | 37.72 |
| CDY32305 | Canola | cytosol | 41.41 | 37.61 |
| KXG30734 | Sorghum | extracellular | 52.53 | 32.7 |
Protein Annotations
| MapMan:35.2 | EntrezGene:9269879 | ProteinID:AAL67597.1 | UniProt:B9G761 | ProteinID:BAH95016.1 | ProteinID:BAT12201.1 |
| ncoils:Coil | ProteinID:EEE51458.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0007049 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009555 | GO:GO:0009556 |
| GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0045732 | GO:GO:0046621 |
| EnsemblPlantsGene:Os10g0575950 | EnsemblPlants:Os10t0575950-01 | PANTHER:PTHR37387 | InterPro:SAMBA | UniParc:UPI00000A1E49 | RefSeq:XP_015614080.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to F5D14.6 protein. (Os10t0575950-01)
Coordinates
chr10:-:22937929..22938822
Molecular Weight (calculated)
10760.6 Da
IEP (calculated)
5.149
GRAVY (calculated)
-0.475
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSPARSTVS AASAGAISAS DDVADSIDAL YRKDEAMAEL KSEVMEALQK EVRSLDDDSW MFAAPRSRIN LVSMSGGYLR KQQEKLADLG QASKKTRNF
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.