CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01858
EES04595
EES05908
EES07517
EES13042
EES16982
KXG28235
KXG29380
KXG31288
KXG31524
KXG33895
OQU76338
OQU84347

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32310.1	EES01858	AT1G43800.1	20706207
AT1G32310.1	EES04595	AT1G79530.1	20706207
AT1G32310.1	KXG31288	AT1G80480.1	20706207
AT1G32310.1	KXG28235	AT2G05830.1	20706207
AT1G32310.1	KXG33895	AT2G20000.1	20706207
AT1G32310.1	EES07517	AT3G48150.1	20706207
AT1G32310.1	EES05908	AT4G21530.1	20706207
AT1G32310.1	KXG31524	AT4G26870.1	20706207
AT1G32310.1	OQU84347	AT4G26870.1	20706207
AT1G32310.1	OQU76338	AT5G13030.1	20706207
AT1G32310.1	EES16982	AT5G24690.1	20706207
AT1G32310.1	EES13042	AT5G55280.1	20706207
AT1G32310.1	KXG29380	AT5G60540.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76519	Sorghum	extracellular	68.55	76.22
Zm00001d030079_P001	Maize	cytosol, nucleus, plastid	33.33	58.24
EER94435	Sorghum	cytosol	40.88	53.72
TraesCS1B01G208900.1	Wheat	cytosol	33.96	52.94
TraesCS1A01G193900.1	Wheat	cytosol	33.96	52.94
Os10t0575950-01	Rice	cytosol	32.7	52.53
TraesCS1D01G197800.1	Wheat	cytosol	33.33	51.96
OQU80353	Sorghum	cytosol	29.56	48.45
HORVU1Hr1G050750.1	Barley	cytosol, mitochondrion, plasma membrane	15.09	43.64
KXG34154	Sorghum	cytosol	14.47	41.82
VIT_05s0124g00450.t01	Wine grape	plastid	17.61	32.18
AT1G32310.1	Thale cress	cytosol	19.5	31.0
GSMUA_Achr5P14060_001	Banana	nucleus	21.38	30.63
KRH39569	Soybean	cytosol, plastid	21.38	30.36
Bra040769.1-P	Field mustard	cytosol	17.61	28.28
CDY61823	Canola	cytosol	18.87	27.52
CDY32305	Canola	cytosol	18.24	26.61
Solyc08g076580.2.1	Tomato	cytosol	18.24	25.66
KRH74384	Soybean	cytosol, plastid	18.24	25.44
PGSC0003DMT400038358	Potato	plastid	15.72	23.36

Protein Annotations

EnsemblPlants:KXG30734	EnsemblPlantsGene:SORBI_3004G233300	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0010997
GO:GO:0040007	GO:GO:0046621	InterPro:SAMBA	PANTHER:PTHR37387	ProteinID:KXG30734	ProteinID:KXG30734.1
UniParc:UPI0007F31AF1	UniProt:A0A194YR78	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:58201473..58203879

Molecular Weight (calculated)

17761.2 Da

IEP (calculated)

5.659

GRAVY (calculated)

-0.347

Length

159 amino acids

Sequence
(BLAST)

001: MGSCCPARCL HVSLSLQHWF QIIAQTLLIK DTSSTRLRRW IREEPAARYD ELPATLTVLA AEDIADSIDA LYHKDEAMAE LKSEVMEALD DDSWMFAASQ
101: SRINLVSSPG KKRTQEQQGA YLPKQHVRET LGAGAGIQEN KELLGCRCLR LQEASSMTP

Best Arabidopsis Sequence Match ( AT1G32310.1 )
(BLAST)

1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW

Arabidopsis Description

SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.